Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01260 ATGGTTAACCAACTGTCTTCTATGTTGGAATTGAAACAACTCCAAGCAACAATCACCAAAGCAGGTTTTCAATCTCATGTTCCTTTCATCTGTAAGTTAATCTTGTTCTCAGCACTTTCTCCTAATGGAAACCTGTCCCATGCTGATTCTCTTTTCCAAAAATCTTCAATGGACAACTCCTTTGTTTGCAACACTATGATTCGAGCTTATGCCAACAGTCCCTCCCCTCTTCAAGCTTTATATATTTACAATCAAATGCAAAACACCAACGTTGTCTCTGATCACTTCACCTTCAATTTTGTTCTCAAGGCCTGCTCTAGAGCTTACAGGTTCATACAAGAATGTCCCACATTTGATGAACTTGCTATTGTTTCTAAAGGTTTTGAAGTTCACTGCACAGTTGTCAAATTTGGGTTTGAACAAGACCCGTGTATTCAAAACTCCTTGCTTTACATGTACTCTCAATGCGGGTTGGTCCCAGTTGCCCAACACCTGTTTGATGAAATCAGCAACAGAAGTTTGGAACATATGCTATGGAAAAAGGTCCTCATTCAGAACAATGAACAGCTGGAGTTGGTCAGGGAGGAGATCCGTGTTTCATCACTGTTCAATCACCCCAATCTTCTCCCACTTCTTGATCATGCAATCATTTCTGTTAAGCAGCCTACCCAAGAAACATCTTGGAACCATGAAGCATACTTGTTATTTCCAGTTCATTTGGATGGAACATTGCTTGACAATGCCAAAACAATGAAAGCCAAGAAGGAATTCTATTCTACCTCAGATGTTCTTCAAATATTTTGGCAGCTTTGTGCTGGACTAAAGCACATGCACAGTTTAGATCCTCCATATGCACATGATGATGTCAAACCTGGTAATGTTCTCATGACACATAGGAAAGGACAGCTGCCTCTTGCCATACTGAGGGACTTTGGCAGTGCTCGTCCTGCCAGGAGGCAAATTAGCTCCAGATCAGAGGCACTCCAGTTGCAGTTGATTTTTTATTCCATTTTTTATATATGTTGTTTATAA 1032 0.405 MVNQLSSMLELKQLQATITKAGFQSHVPFICKLILFSALSPNGNLSHADSLFQKSSMDNSFVCNTMIRAYANSPSPLQALYIYNQMQNTNVVSDHFTFNFVLKACSRAYRFIQECPTFDELAIVSKGFEVHCTVVKFGFEQDPCIQNSLLYMYSQCGLVPVAQHLFDEISNRSLEHMLWKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLDHAIISVKQPTQETSWNHEAYLLFPVHLDGTLLDNAKTMKAKKEFYSTSDVLQIFWQLCAGLKHMHSLDPPYAHDDVKPGNVLMTHRKGQLPLAILRDFGSARPARRQISSRSEALQLQLIFYSIFYICCL. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01260 343 Pfam Protein kinase domain 179 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01260 343 ProSiteProfiles Protein kinase domain profile. 145 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01260 343 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 59 93 IPR002885 -
Seca11g01260 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
Seca11g01260 343 Gene3D Tetratricopeptide repeat domain 11 121 IPR011990 GO:0005515
Seca11g01260 343 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 176 331 - -
Seca11g01260 343 Pfam PPR repeat family 59 106 IPR002885 -
Seca11g01260 343 NCBIfam pentatricopeptide repeat 62 94 IPR002885 -
Seca11g01260 343 Gene3D Transferase(Phosphotransferase) domain 1 163 336 - -
Seca11g01260 343 SUPERFAMILY Protein kinase-like (PK-like) 175 319 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01260 Seca-Chr11 13434087 13437869 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01260 37 174 Glycoside Hydrolase AT3G49170 25.595 7.34e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Seca11g01260 Pkinase 2.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01260 K08856 - gmx:100803659 280.026