Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01257 ATGGGGTGCTCATTCTCTGGTTTAAATGCATTATACGATTCGGTGAACGGAGGAGGGGACTTGTGGATCAACGAGAACCGTTTCCGCATCGTGAGGAAGCTCGGTGAAGGTGGCTTCTCCTATGTCTACCTCGTCAAGGAGGTGCTCAACGATTCTGCTGTCGGTGGCCTCGCCACGAAGCTCAAACACTCCTCTCATCTCTCTGAAGACGGAACATATGCTATGAAAAAGGTCCTCATTCAGAACAATGAACAGCTAGAGTTGGTCAGGGAGGAGATCCGTGTTTCATCACTGTTCAATCACCCCAATCTGCTCCCACTTCTTGATCATGCAATCATTTCTGTTAAGGTACTGGTTGATATTTTGTATATCATGTCTGGGTTGATTGCAGCCAATTATTCAGCCATTTGTAATTTGATTAATTCTGTAAGAATAAGCTTTGTGCCACTGTGCAAAATCTTCTTCTCCAAACTTGTTCATTTGGATGGAACATTGCTTGACAATGCCAAAACAATGAAAGCCAAGAAGGAATCCTATTCTACCTCAGATGTTCTTCAAATATTTCGGCAGCTTTGTGCAGGACTAAAGCACATGCACAGTTTAGATCCTCCATATGCACATAATGATGTCAAACCTGGTAATGTTCTCATAACACATAGGAAAGGACAGCCGCCTCTTGCCATACTGATGGATTTTGGCAGTGCTCGTCCTGCCAGGAGGCAAATTAGCTCCAGATCAGAGGCACTCCAGTTGCAGGAATGGGCATCTGAACATTGCTCTGCTCCTTTCCGAGCCCCTGAGCTGTGGGATTGTCCAAGCCATACTGATATAGATGAGAGGACTGACATTTGGTCACTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCACTTGGAGAGTCTGGTGGAAGCCTGCAATTGGCTATTGTAAATGCTCAGATCAAATGGCCAGCTGGACCTAAGCCTTCATATCCAGAAGCTCTTCATCAGTTTGTGTCATGGATGCTTCAGCCCCAGGCTGCTGTGCGGCCCCGAATAGACGATATCATTATCCATGTTGATAAGTTGATTGCAAAGTTCACTCATTGA 1107 0.449 MGCSFSGLNALYDSVNGGGDLWINENRFRIVRKLGEGGFSYVYLVKEVLNDSAVGGLATKLKHSSHLSEDGTYAMKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLDHAIISVKVLVDILYIMSGLIAANYSAICNLINSVRISFVPLCKIFFSKLVHLDGTLLDNAKTMKAKKESYSTSDVLQIFRQLCAGLKHMHSLDPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARRQISSRSEALQLQEWASEHCSAPFRAPELWDCPSHTDIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQIKWPAGPKPSYPEALHQFVSWMLQPQAAVRPRIDDIIIHVDKLIAKFTH. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01257 368 Gene3D Phosphorylase Kinase; domain 1 13 121 - -
Seca11g01257 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Seca11g01257 368 CDD STKc_16 27 364 - -
Seca11g01257 368 Gene3D Transferase(Phosphotransferase) domain 1 161 366 - -
Seca11g01257 368 SMART serkin_6 28 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01257 368 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 366 - -
Seca11g01257 368 Pfam Protein kinase domain 65 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01257 368 ProSiteProfiles Protein kinase domain profile. 28 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01257 368 SUPERFAMILY Protein kinase-like (PK-like) 22 358 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01257 Seca-Chr11 13406298 13411307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01257 163 358 EF-hand Containing Proteins AT4G04710 27.861 4.13e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Seca11g01257 Pkinase 1.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01257 K08856 - gmx:100803659 601.282