Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01253 ATGGCACAAGATACTGTTTCTGGCATTGAATCACCTCGGCGACGATATGGTCTATTGCGAGATCAGGTTCAACTAGTTAAAAGAAAGGATTCTGATCGCTATGAAATTGTTCCAATCCAGGACACTTTGTCATTTGAGAAAGGATTCTTCATAGTTATTCGTGCATGCCAGTTGTTGGCTCAAAAGAATGATGGAATCATATTAGTAGGAGTTGCAGGTCCCTCTGGAGCAGGGAAAACTGTTTTCACTGAGAAGGTCCTCAATTTTATGCCAAGCGTCGCTGTCATAACAATGGACAATTATAATGATTCTAGTCGAATCATAGATGGCAACTTTGATGACCCCCGGTTGACGGATTATGATACCTTGCTTGAAAATATACAGGGTCTTAAAGAAGGGAAGCCTGTTCAGGTTCCAATATATGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGACTGTTGAAGTCCCTAGCTCCCGTATCGTAATCATTGAAGGCATCTATGCCGTGAGTGAAAAATTAAGGCCTTTGCTTGATCTCCGTGTTTCTGTCACCGGTGGAGTTCATTTTGACCTTGTCAAACGTGTTTTGCGGGACATTCAACGTGCTGGTCAAGAGCCTGAAGAAATAATTCATCAGATTTCTGAAACGGTATATCCCATGTATAAAGCTTTTATAGAGCCAGATCTCCAAACAGCACATATAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTCCAGAATCCCACCTACATATTGAAGTCAGCAAGAGCTGTGACAGTAGATCAAATCAAGGCAGTTATTGCTGCAGAGCATACTGAATCCAAAGAGGAAACATATGACATATATCTTCTACCCCCTGGGGAAGACCCTGAAGCATGTCAATCATATTTGAGGATGAGAAACCGGGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTTACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGCCTACTCGGAGGGCTGATGGCCTTGGGGTACACAATTGCAGCTATCCTGAAAAGAAGCAGCCATGTCTTTCATGATGATAAAGTGTCCATAAAAACTGATTGGCTAGAACAACTTAACCGCTTATACATTCAGGTGCAAGGGAAAGATAGAAACTATGTTAAATTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACGTACATTGAACAAATCCAGCTAGAAAAGCTCGTAAATGATGTGATGGCACTGCCAGATGATCTAAAGACAAAACTCAGCATAGATGATGATATGGTTTCAAGTCCCAAAGAAGCCCTTTCCAGAGCTTCTGCTGATAGGAGAATGAAATATCTTAATCGTGGTATTTCACACTCATATTCAAATCAAAGGGACAAGATTCTGCCTAAGTTGACTAAACTTGCTATAAATAACAGAAGATTCGATGGGAGAGCTCTAGAATCACCTGCACCGATTGCTAACCAAGTAAGATATATTTGCCTTATGAAGTCATTCAAGGAGTATCATTTTGGCTACTTCATTCATCATTGTATCACCAGCTATCTTATTTTGTGGAACTTAGCTACCTGCTGA 1602 0.4051 MAQDTVSGIESPRRRYGLLRDQVQLVKRKDSDRYEIVPIQDTLSFEKGFFIVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSVAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKEGKPVQVPIYDFKSSSRIGYRTVEVPSSRIVIIEGIYAVSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSARAVTVDQIKAVIAAEHTESKEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVSIKTDWLEQLNRLYIQVQGKDRNYVKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDMVSSPKEALSRASADRRMKYLNRGISHSYSNQRDKILPKLTKLAINNRRFDGRALESPAPIANQVRYICLMKSFKEYHFGYFIHHCITSYLILWNLATC. 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01253 533 CDD UMPK_like 68 240 - -
Seca11g01253 533 Gene3D - 67 247 IPR027417 -
Seca11g01253 533 Pfam Phosphoribulokinase / Uridine kinase family 69 237 IPR006083 GO:0005524|GO:0016301
Seca11g01253 533 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Seca11g01253 533 PRINTS Uridine kinase signature 189 199 - -
Seca11g01253 533 PRINTS Uridine kinase signature 66 83 - -
Seca11g01253 533 PRINTS Uridine kinase signature 225 238 - -
Seca11g01253 533 PRINTS Uridine kinase signature 133 148 - -
Seca11g01253 533 Pfam CYTH domain 273 405 IPR023577 -
Seca11g01253 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 237 IPR027417 -
Seca11g01253 533 Gene3D - 255 414 - -
Seca11g01253 533 FunFam Phosphoribulokinase / Uridine kinase family 67 247 - -
Seca11g01253 533 PANTHER URIDINE KINASE 18 424 - -
Seca11g01253 533 SUPERFAMILY CYTH-like phosphatases 261 408 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01253 Seca-Chr11 13359464 13368034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01253 68 237 PRT Gene Family AT5G40870 27.933 6.58e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01253 K00876 - gmx:100803122 934.48