Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01240 ATGGAAAACATAGCCACCTCAAAATTTTCACACCAATCTCAAAAACAAAACAAGAATCTCTCTTTAATGCCTATTGAATATGATGAGAAGAGAGAAGGGAGTATTATGAAGATTCCAAAAATAACAAACAAGAGTCAAAAAAAGTTTCTAGGAGTGAGACAAAGGCCTTCAGGAAGATGGATTGCTGAGATCAAGGACTCTTCACAGAAACTAAGGGTGTGGTTAGGGACTTTTGACAGAGCAGAAGAGGCTGCCCTGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGAAGAAATGCCAAAACAAACTTTCCAAACCCAGGAATCATAAACACTCATGAGGAAGATTGCAGCATTTTGGGAAAGAATCCCAGGGCATACCAGATTCTTAAGCATGCAGTCATGAAGAACCATGCACTTCACTCATCATCCGTTTATTCCACCACAGTCATGCCTTGGAAAAATCAGAACATGAGAGTTGAAGATCACACACTTGTTGAGGAAACTATAGTTTGCTTCATTCCTGAAGAAGGTACTGGGTGTAGTGGAATTTCATTTGGAAGTTCAAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGCTTCTTCTCACTGTCAAACAGGATAA 633 0.3997 MENIATSKFSHQSQKQNKNLSLMPIEYDEKREGSIMKIPKITNKSQKKFLGVRQRPSGRWIAEIKDSSQKLRVWLGTFDRAEEAALAYDCAARLLRGRNAKTNFPNPGIINTHEEDCSILGKNPRAYQILKHAVMKNHALHSSSVYSTTVMPWKNQNMRVEDHTLVEETIVCFIPEEGTGCSGISFGSSKVYSSVVVAPSFSASSHCQTG. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01240 210 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 133 - -
Seca11g01240 210 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Seca11g01240 210 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Seca11g01240 210 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Seca11g01240 210 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Seca11g01240 210 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Seca11g01240 210 CDD AP2 47 106 IPR001471 GO:0003700|GO:0006355
Seca11g01240 210 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Seca11g01240 210 FunFam ethylene-responsive transcription factor RAP2-11 47 106 - -
Seca11g01240 210 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01240 Seca-Chr11 13309805 13310437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01240 45 106 AP2-EREBP Transcription Factor Family AT5G19790 69.355 1.31e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g01240 AP2 2.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01240 - K09286 var:108340966 304.679