Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01235 ATGGAGCCCATGGACATCGTTGGCAAATCAAAGGAAGATGCCTCGCTTCCTAAAGCAACAATGACAAAAATTATTAAAGAGATGTTGCCTCCAGATGTACGTGTTGCAAGAGATGCTCAAGATCTATTGATTGAGTGTTGCGTAGAGTTTATAAACCTTGTCTCATCAGAGTCCAATGAAGTCTGTAATAGAGAGGAAAAACGAACTATTGCACCTGAGCATGTATTGAGGGCTCTAGAGGTATTTGTGCAATCTTTTTATATTTAA 267 0.3895 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREEKRTIAPEHVLRALEVFVQSFYI. 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01235 88 Gene3D Histone, subunit A 6 87 IPR009072 GO:0046982
Seca11g01235 88 PANTHER PROTEIN DR1 HOMOLOG 1 85 IPR044255 -
Seca11g01235 88 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Seca11g01235 88 SUPERFAMILY Histone-fold 12 81 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01235 Seca-Chr11 13221542 13226022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01235 1 88 CCAAT-DR1 Transcription Factor Family AT5G23090 87.500 6.00e-53 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca11g01235 CBFD_NFYB_HMF 2.1e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01235 K21751 - tcc:18604965 159.844