Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01231 ATGGCAGAACCAGAAGACAACCTTCAAGCCTCGACTATGGATGAAACCAAGAAGAAGAAGCAGAAGAAGAAGCGTGACAAAAAAAGGTCCCGGGATATTGCTGAAGAAGAGCATGCAGAAGAAGAGGAAAATGGGAATAATACTGATAGAGATGGAGAATCCTTGAATAAGAAGAAGAAGGAAGAGGAGGAGGTGGAAGGGGAAATTGAAGTGGAAGAGAAAAAGGTGAAGAACAACGCTGGCTCTGGAATTATGAGTAATGAGTCTTTTGATTCTCTGGGATTGTCTGAACCTACTTATAAGGCCATTATGGACATGGGATTCCACCACATGACTCAGATTCAAGCGAGAGCAGTTCCACCACTTTTGATTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCCGGAAAAACTCTTGCCTTTTTGATTCCTGCTGTGGAGCTGCTGTACAATGTTAAATTTACACCTCGTAATGGAGCTGGTGTTATTGTCATATGCCCAACTAGAGAGCTTGCAATTCAGACACATGCTGTGGCCAAGGAGCTTCTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGAGGTTCAACTAGAAAACTTGAAGCTGAACGAATTGCCAAAGGGTTAAATCTATTGGTAGCAACTCCTGGTCGACTTCTAGATCATCTTCAAAATACAAAAGGATTCATATATAAAAACTTGAAGTGCCTCATGATTGACGAAGCTGACAGGATATTGGAAGCCAACTTTGAAGATGAAATGAAGCAGATTATTAAGATCCTCCCAAAGAATAGGCAAACAGCGTTATTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCTCGCTTGTCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAAACAAGGTCACAAATGAAGGATTGCTGCAGGGTTATGTGGTTGTACCCTGTGCCAAGCGATTTATTGTTCTCTATTCCTTTTTGAAGAGGCATCAGTCGAAAAAAGTGATGGTCTTTTTCTCGTCATGCAACTCTGTCAAATTCCATGCTGACATTCTTAATCTCATTCATATGAATTGTTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGGACAACTACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATCTTACTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCCGTGGACTGGATTGTGCAATATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGGAATGCTTTGCTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCTAAGGTCCCAGTGAAAGAATATGCATATGATGAAAAGAAGGTGGCAAATGTGCAGTCTCACCTGGAGAATTTGGTAGCCAACAACTTTTATTTGAACAAGATGGCTAAAGAAGCTTATAGATCATACATATTAGCATACAATTCACATTCCATGAAAGATATATTCAATGTTCACCGCCTCGATTTGCAGGCCGTTGCTGCTTCATTCTGTTTTTCAAACCCACCGAATGTGAGTGTGAACATAAAGAGCAGCAGTAAGCAAAGGAAGAAAATGCGTAAAGTTGATGGAAGTAGAAATGGATTCAGCCACAACAATCCTTATGGAAGAGGAAATGCTGACGATGAGCGGCAGTTTGTGAGGCATTAG 1725 0.4139 MAEPEDNLQASTMDETKKKKQKKKRDKKRSRDIAEEEHAEEEENGNNTDRDGESLNKKKKEEEEVEGEIEVEEKKVKNNAGSGIMSNESFDSLGLSEPTYKAIMDMGFHHMTQIQARAVPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVIVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSTRKLEAERIAKGLNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEDEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRNKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIHMNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVANNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPNVSVNIKSSSKQRKKMRKVDGSRNGFSHNNPYGRGNADDERQFVRH. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01231 574 Gene3D - 309 552 IPR027417 -
Seca11g01231 574 SMART helicmild6 348 429 IPR001650 -
Seca11g01231 574 MobiDBLite consensus disorder prediction 1 74 - -
Seca11g01231 574 Pfam Domain of unknown function (DUF4217) 470 530 IPR025313 -
Seca11g01231 574 Gene3D - 32 298 IPR027417 -
Seca11g01231 574 FunFam RNA helicase 305 535 - -
Seca11g01231 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 450 IPR027417 -
Seca11g01231 574 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 240 248 IPR000629 -
Seca11g01231 574 CDD DEADc_DDX18 99 296 IPR044773 GO:0003724|GO:0005524
Seca11g01231 574 Pfam DEAD/DEAH box helicase 112 283 IPR011545 GO:0003676|GO:0005524
Seca11g01231 574 PANTHER RNA HELICASE 27 477 - -
Seca11g01231 574 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 468 IPR001650 -
Seca11g01231 574 MobiDBLite consensus disorder prediction 43 74 - -
Seca11g01231 574 SMART ultradead3 107 312 IPR014001 -
Seca11g01231 574 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 88 116 IPR014014 GO:0003724
Seca11g01231 574 SMART DUF4217_3 469 532 IPR025313 -
Seca11g01231 574 Coils Coil 55 75 - -
Seca11g01231 574 Coils Coil 17 44 - -
Seca11g01231 574 CDD SF2_C_DEAD 309 439 - -
Seca11g01231 574 MobiDBLite consensus disorder prediction 533 574 - -
Seca11g01231 574 Pfam Helicase conserved C-terminal domain 324 428 IPR001650 -
Seca11g01231 574 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 119 294 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01231 Seca-Chr11 13194773 13201222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01231 87 447 Eukaryotic Initiation Factors Gene Family AT3G13920 31.233 1.80e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01231 K13179 - gmx:100798885 986.867