Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01214 ATGTATTCCTCTCTCAACTCCTACCCTAACCAAACATTCTTCTCTACTTCTAGGCCTTTTTCCTTTGAAAGCAACCCTTCTTCAAAAGATATTGAAACCAATTATTGTTCTCCTCTTCCTCCTCCTCTTCTTCCTCCACCTCCTTTGTCCTTTTTTCAATTCCCTTTTTCTCCCTTTGAAGATAACAACAACAACAACCACAATGAAATCTTCAACCACCTTGAACAACCACAACAACAACAACAACCTGATTTGTTACTTCATCAATCTCTACCTCCTGAAGCTGTTATGAACATAGATGCTGCTGCTTCTGCTATGATGAACAGCAAGATTCCTGGTAAAGCTGCTGCTGCAACTACAGGACAAGGAACTACTGCAATGATGGAGCAGATCCCAAGAAAAAGATCTATTAAGAGAGATCGGCACAGTAAGATCAACACAGCTCGAGGACTCAGAGATCGGAGAATGAGATTGTCCCTTGAAGTTGCAAAAAGGTTTTTTGGCCTTCAAGATATGTTAGGCTTTGACAAAGCTAGCAAAACTGTTGAGTGGTTACTTAACCAAGCAAAAGTTGAAATCAAACAACTTGCAAGAGACAAGAATCAAAATCAAAATAGTTGTAGCAGTGTTGGTGGTGCTAAGAGTGCATCTTCAACTTCAGAATGTGAAGGGGTGTCAAGCTTGGATGAGGTTGTAGTGAGTGAAATTAATCATCAAGAACAACAACATACCACTATAGGGAAGAGAAGAATTAAGGCTTGTAGAAGAAAGAGTGCATTCAATCCTATTGGTAGAGAAAAGGCAAGAGAAAGGGCAAGAGAAAGAACAAGAGAAAAGATGATGAAGACTAAGAGATTAATAGTAGCTGATCATGATGAATCAAACTATTGGAATATTAATCCTTTTGAAAAGGAACAAAGTGTGAATCATCCCTCTTTGGATTTGCTTCAACCTGAGGCTGATCAAGAACCAAGTTATTCTCAAGCAAAGGAACATTCTAGAACTGTGGTTGAAGAAGATATGGCACATGAAGATTCTTTCTTGATTATGAATAAATGGAGCCCAACAACTATGATGTTCACTTCTCTTAATAACTCAGGATCAATCCTTCAGGAACCTCATCAATTTGCAGAATTTCAGTCCTTGAGAAAACATTGGGAGGCCTATAACAATCGCATCTAA 1182 0.3866 MYSSLNSYPNQTFFSTSRPFSFESNPSSKDIETNYCSPLPPPLLPPPPLSFFQFPFSPFEDNNNNNHNEIFNHLEQPQQQQQPDLLLHQSLPPEAVMNIDAAASAMMNSKIPGKAAAATTGQGTTAMMEQIPRKRSIKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLARDKNQNQNSCSSVGGAKSASSTSECEGVSSLDEVVVSEINHQEQQHTTIGKRRIKACRRKSAFNPIGREKARERARERTREKMMKTKRLIVADHDESNYWNINPFEKEQSVNHPSLDLLQPEADQEPSYSQAKEHSRTVVEEDMAHEDSFLIMNKWSPTTMMFTSLNNSGSILQEPHQFAEFQSLRKHWEAYNNRI. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01214 393 ProSiteProfiles TCP domain profile. 138 196 IPR017887 -
Seca11g01214 393 MobiDBLite consensus disorder prediction 199 221 - -
Seca11g01214 393 Pfam TCP family transcription factor 138 282 IPR017887 -
Seca11g01214 393 Coils Coil 186 206 - -
Seca11g01214 393 ProSiteProfiles R domain profile. 262 279 IPR017888 -
Seca11g01214 393 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 108 354 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01214 Seca-Chr11 12945063 12947145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01214 46 276 TCP Transcription Factor Family AT3G18550 33.712 2.81e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca11g01214 TCP 8.2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01214 - - gmx:100803669 337.806