Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01211 ATGTTCCATGGCGTTGTGGCTCGTGGAAGGTTTTCACTACCTGCGCCATCAGCTCCACGTAATCGACATTGGGCACCGTGCCATGCCGTCGTTGCAACACCGTTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTCGAGAGCTTATATGTTCGTGGCTTTCCGGCAGTCAATCTGAAGATTGTGTTCCTTCCCTTACTGACATTTGAAATCATTATTCTCATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAAACTCTTCCTCACTTTTGGATTGCAATCTCTATGGTGTTCTTCATAGCTGCTACAATCTTCACAATCCTAAAACTGAGTGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTATTTATTAACTTTGCTATTGCCGAGTGCTTTAGTTTTCTTGTATGTACAAAGTGGTCCAATCCGGTCATTCATAGAAATTCCAGGGAAGCCAGTTCATCTTCTAGTGCAGTTAGATATCTTGATTGGAACAGTGGCTTTGTTGTGTCTTCAGAGGAAAATCAACGTCAGGAGAGAATGTGTAGCCTGCAAGACATAGGAGGTCATTTCATAAAAGTACCGGTTATTGTATTCCAGATTCTTCTTTGTATGTATTTAGAGGGAACACCTGCTTGTGCTGTATATATACCTCTTCCAGTTATTTTCTCTCCCCTTTTCGTACTGCAAGGTGCTGGTGTGCTGTTATCTGTATCTAAATTTGTGGAGAAACTTGTGCTTCTACTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGATTTTCTTCGAGAGCTCATGATTGCTTGGGGTTCTTGCACCATGGCTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCTGGAAGAACAGGCACGATTGTACCATGAGGGAGCATCTGGGTATAATACGTTCTGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCTAAAAGGGATCTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAGCAGACAGAAATTACAAAATACAGCCAACAGGAATATGAAAGACTTAAAAATGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTAGCGTTGTATTGCTCCCATGCAGGCATCGTGTCCTTTGCAGCTCTTGCTCAGAGAAGTGTAAGAAGTGCCCAATTTGTCGTGACCCTATTGGGGAGCGCTTGCCAGTGTATGATGTTTAG 1260 0.4294 MFHGVVARGRFSLPAPSAPRNRHWAPCHAVVATPLLIAFELLLCIYLESLYVRGFPAVNLKIVFLPLLTFEIIILIDNFRMCRALMPGDEESMSDEAIWETLPHFWIAISMVFFIAATIFTILKLSGDVGALGWWDLFINFAIAECFSFLVCTKWSNPVIHRNSREASSSSSAVRYLDWNSGFVVSSEENQRQERMCSLQDIGGHFIKVPVIVFQILLCMYLEGTPACAVYIPLPVIFSPLFVLQGAGVLLSVSKFVEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLHHGSRLLGWWSIDEGSLEEQARLYHEGASGYNTFCGYPPEIVKKMPKRDLAEEVWRLQAALGEQTEITKYSQQEYERLKNEKVLCRICFEGEISVVLLPCRHRVLCSSCSEKCKKCPICRDPIGERLPVYDV. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01211 419 FunFam Kinesin-like protein KIN-7D, mitochondrial 349 417 - -
Seca11g01211 419 ProSiteProfiles Zinc finger RING-type profile. 372 407 IPR001841 -
Seca11g01211 419 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 419 - -
Seca11g01211 419 SUPERFAMILY RING/U-box 364 414 - -
Seca11g01211 419 Pfam Transmembrane Fragile-X-F protein 1 244 IPR019396 -
Seca11g01211 419 Pfam Zinc finger, C3HC4 type (RING finger) 369 411 - -
Seca11g01211 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 417 IPR013083 -
Seca11g01211 419 SMART ring_2 372 406 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01211 Seca-Chr11 12885881 12894907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01211 2 419 C3H Transcription Factor Family AT1G73950 72.727 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01211 - - gmx:100791390 782.326