Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01210 ATGTCATCAAGTGGAACCATTTGGAGCTATGAAGAAGAAAAAGCATTTGAGAATGCCATCGCTATGCATTGGATTGATGAGGCCTCAAAAGAGCAATGGGAAAAGATTGCTTCAGCTGTCCCTAACAAAAGCATGGAAGAAGTGAAGCAACATTACCAGGTACTTGTAGAAGATGTAAGTGCAATTGAGGCAGGTCATATATCATTTCCAAACTATGTTGCAGAGGAAACTACATCTTCAAATAAGGATCTCCATGGCTCTTCCAAGTCTACAACTTCAGAAAAGAGATCAAATTGTAATTATGGAAGTGGGTTTTCTGGATTAGGACATGACTCCACCACACATAGTGGTAAAGGAGGATTATCAAGGTCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAGGAGGAGCACAGGTTATTTTTACTTGGTCTAGACAAATTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATTTCTAGGACTCCAACTCAAGTGGCAAGTCATGCACAAAAGTACTTCATAAGATTGAATTCCATGAATAGAGACAGAAGGAGGTCTAGTATACATGATATTACAAGTGTAAACAATGGAGATGTGGCTAGTAATCAAGCACCAATTACAGGACAGCATAGCAGCACAATCCCTTCAAGTACAATGGCTGTAGGACAATCACTGAAGCATAGAGTACATCAGCCCCATATACCAACTGGTTTAGGCATGTATGGAACACCAGTTGGGCATCCTGTGGCTGCTCCTCCTGGCCATATGGCATCTGCAGTTGGGACTCCAGTCATGCTTCCTCCTGGACCCCACCCTCACCCTCACCCCCATCCCCATCCCCATCCCCATCCTCATCCACCTTATGTTGTCCCTCTTGCTTACCCAATGGCACCTCCAACAATGCACCAATAA 930 0.4333 MSSSGTIWSYEEEKAFENAIAMHWIDEASKEQWEKIASAVPNKSMEEVKQHYQVLVEDVSAIEAGHISFPNYVAEETTSSNKDLHGSSKSTTSEKRSNCNYGSGFSGLGHDSTTHSGKGGLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNQAPITGQHSSTIPSSTMAVGQSLKHRVHQPHIPTGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHPHPHPHPHPHPHPHPPYVVPLAYPMAPPTMHQ. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01210 309 Gene3D - 1 69 - -
Seca11g01210 309 MobiDBLite consensus disorder prediction 272 292 - -
Seca11g01210 309 ProSiteProfiles SANT domain profile. 3 52 IPR017884 -
Seca11g01210 309 CDD SANT 8 56 IPR001005 -
Seca11g01210 309 Pfam Myb-like DNA-binding domain 134 179 IPR001005 -
Seca11g01210 309 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Seca11g01210 309 CDD SANT 134 179 IPR001005 -
Seca11g01210 309 SMART sant 4 58 IPR001005 -
Seca11g01210 309 SMART sant 131 181 IPR001005 -
Seca11g01210 309 Gene3D - 133 185 - -
Seca11g01210 309 ProSiteProfiles Myb-like domain profile. 127 179 IPR001005 -
Seca11g01210 309 SUPERFAMILY Homeodomain-like 6 61 IPR009057 -
Seca11g01210 309 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Seca11g01210 309 MobiDBLite consensus disorder prediction 78 133 - -
Seca11g01210 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 181 IPR006447 GO:0003677
Seca11g01210 309 SUPERFAMILY Homeodomain-like 129 184 IPR009057 -
Seca11g01210 309 ProSiteProfiles SANT domain profile. 135 183 IPR017884 -
Seca11g01210 309 PANTHER TRANSCRIPTION FACTOR KUA1 4 303 - -
Seca11g01210 309 MobiDBLite consensus disorder prediction 78 121 - -
Seca11g01210 309 FunFam Transcription factor SRM1 1 69 - -
Seca11g01210 309 FunFam transcription factor MYB1R1 133 184 - -
Seca11g01210 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 183 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01210 Seca-Chr11 12866920 12868570 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g01210 Myb_DNA-binding 9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01210 - - gmx:778049 532.717