Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01195 ATGTCTCAAGTCAAGTGGGAAGCCGATAAAATGCTAGATGCTTATATCTACAATCATTTGATGAAGAGACAATTACATGTTTCTGCAAGAGCATTTCAGGCTGAAGCAAATGTTCCAACGGATACTGATATTATAGATGCACCTCAAGGTTTTCTCTTTGAGTGGTGGTCTGTCTTCTGGGACATATTCATTGCCAAGACTGGTCAGAACCAGTCAGAAGCAGCAACATTTTACCATCAGTACCAACTAAATAAGGCGCAAATGGAGAAGCAACAAGATCCAATGCAGGAGCAGTTCTTATTGCAAGGGCATGCTCAACAGCAACAATGTAGGGGTGGAACTCAACTTGTTAGTGGCAGTGCTAGACGTCCTCCTATTAACAAAGATCCTTTGATGAGGCAGACCAGGACAACTATCAATGCTGTGGCAACAAAGAAGTATGAGGACAGGTTGAAGCTTCCATTCCAGAGAGATGCTTTAGATGATGTGGCCATTATGCAAAATGAAGCTGATAATGTTGGTCAGCTTCTGGACCCGAATTATGCCGCATTGTTGAAAGCAATAGGAGCAGCAACAACTAGTGGACAAGCTATAGGACAAACACTGCTCAGTGCTCCTATCATTTTACCGGAGTATCTTCAACAAGTCCAAAATCAGAACCAGCAACTTCCAGGGTCTACACAAGACATAAAGAGTGATATGAATGTAATGATGAGGTCCCAAGCTGTTGTTCCAGAAGGATCCTTTATCGGCGTTCATGGTTCAAATCAAGGCAGTAGCAATTTGACTCTGAATGGATGGCCTTTAGCAGCACTGGATCAGCTTCCCTCAGGACTTCTCCAGCAGAATAATTTGATGCGGTCTTCACAATCTCCCAATCAACTTTCCCAACAGCTGCAACTTAAGCTTCAGGAACAACAGAATTTTGCTGCATTTGCCAGTGATTTAGCAGGCAGAAGACTCAGAGAGCTTCTTAATAATCAAAATATGGATCTTGGGAAAGATGGCCAATCAAATTCTATTGGTGATTTAATTCCTAATGCTAATATGGGAATGCCTGCACCTACTCAAGTTGGTTCCCCTGTATTGCCTCATCAAGACTCAGATATGCTCCTTAAGCAACAAGTTCAAAAGAATAGTCAGCAGGTTCAACAGTATTCACAGCGTCCTCTTTCAAGCCAGCTGCCGCAAAATCTTCAGCAACAAGGAAAAACTGGTTCTGGAAGTGTGTCCATTGCCTTACAAGGAAATGACCAGGCTTCCAAAAGTCAAATCAAGAAAACGCGAAAGCGAAAGCCAGCATCATCTTCAGGTTCTGCAACTGCAAACACCACAAGACCATCTACCAGTTCACCTTCAACACCATCTACACAAACACCAGGAGACGTGATGACTGAGCCAACTGTGCAACAGAAGGTTTCTTCCTCTAAGTCACTTGCATCAGCAAAGAATCAATTGGCTGATATGGAAGACCTCGTGGGTGATTCATCTTTGGGTGACAATGTTGAGTCATCCTCATCTCCTGATGATGCAAGCCATAGAGGTACAGTTGGCAAAGGCGGATACCCATTTAAGGAGATCAAGCACATAATGGCAAGTTCACATAAAGTCGAGTGTTGTCACTTCTCATCAGATGGAAAACTGTTTGTTACTGGTGGCCATGATAAAAAGATATTTCGCGCCCATGAGACATGTGCTGGGGTTTGGGAGCAGGCAAGGGTGCTTTACACCAATGATACTCAGCGCCTCTATGGTGTTTGCCACAACCTCTTGAGTACCATTGTCCCTAGACGACTTGATGGATCCATGGCTGAGTACTTGGGCAAAGTTCATGGTCTTTTACATGACTTCAATGAACTCTTGCCCCCCGCTTCCACTCCTGCCCAAGAACTGGAGCAACGCCAGACTTTCTTTATGTTGATGGCATTGTATGGGCTCCCAGACGAGTATTCTTTGGTCCGTGATCAGATTTTGGGATCTCCGACTGTGCCCACTTTGACCTCCACTTGGTCAACGTTGTTGCGTGTGCCGCCCAAGTCATCTATTGACATTCCTTCTCCTATCACCCCTGTTGACTCTTCTGCCTTAGTATCCCAGCGTGATGATCGTAGCCGCTCTCGCAAACCAGGCAAGACTCGTCACAGGTGTGATCATTGCCACAAATTGGGCCACACTATTGATCGGTGTTTTGCATTGCATGAATCATTTAACCTGAAATCTTCACTTGAAGAGCACACTCAATGGATAACTGATGTTCGATTTTGTCCAAGTATGCCGCGTCTTGCCACATCTTCAGCTGACAAGACTGTTAGGGTTTGGGATGCTGATAATCCTGGTTATTCTCTTCGAACATTCACAGGACATGCAACAACTGCGTTCTCACTAGATTTTCACCCTAATAATGATGACCTTATTTGCTCTTGTGACAATAGTGAGATAAGATACTGGAGTATTAAGAATGGTAGTTGTGCTGGGGTTTTCAAGGGTGGTGTAAGTCAGATAAGATTTCAACCATGTTTTGGAAAGCTTCTTGCAGCCGCTGCAGATAATCTCATATCCATTCTTGACGTAGAAACCCTGGGTTGTAGCCTTAAAATGGAGGGCCATAATAACCCTGTCCGTACTGTGTGCTGGGATTCTTCTGGAAAATATCTGGCATCTGTTAGTGATGATCTGGTTAGAGTCTGGACAGTTGGATCTGGTGGAGAAGGGCAATGCATTCGTGAGTTGAATGAATTTGGGATGAAATTCAACACCTGTGTTTTCCACCCCTTCTCTCCTATGCTAGTCATTGGTTGCCATAAGACTCTTCAGCTGTGGGACTTCATTGAAAACAAGACAGTGACTCTGAGTGCACATAACAAGCTTGTATCTTCCTTGGCAGTATCAAATGTTACTGGGTTGGTGGCTTCAGCTAGTCATGACAAGTCTTTCAAGATCTGGAAGTGA 2949 0.4418 MSQVKWEADKMLDAYIYNHLMKRQLHVSARAFQAEANVPTDTDIIDAPQGFLFEWWSVFWDIFIAKTGQNQSEAATFYHQYQLNKAQMEKQQDPMQEQFLLQGHAQQQQCRGGTQLVSGSARRPPINKDPLMRQTRTTINAVATKKYEDRLKLPFQRDALDDVAIMQNEADNVGQLLDPNYAALLKAIGAATTSGQAIGQTLLSAPIILPEYLQQVQNQNQQLPGSTQDIKSDMNVMMRSQAVVPEGSFIGVHGSNQGSSNLTLNGWPLAALDQLPSGLLQQNNLMRSSQSPNQLSQQLQLKLQEQQNFAAFASDLAGRRLRELLNNQNMDLGKDGQSNSIGDLIPNANMGMPAPTQVGSPVLPHQDSDMLLKQQVQKNSQQVQQYSQRPLSSQLPQNLQQQGKTGSGSVSIALQGNDQASKSQIKKTRKRKPASSSGSATANTTRPSTSSPSTPSTQTPGDVMTEPTVQQKVSSSKSLASAKNQLADMEDLVGDSSLGDNVESSSSPDDASHRGTVGKGGYPFKEIKHIMASSHKVECCHFSSDGKLFVTGGHDKKIFRAHETCAGVWEQARVLYTNDTQRLYGVCHNLLSTIVPRRLDGSMAEYLGKVHGLLHDFNELLPPASTPAQELEQRQTFFMLMALYGLPDEYSLVRDQILGSPTVPTLTSTWSTLLRVPPKSSIDIPSPITPVDSSALVSQRDDRSRSRKPGKTRHRCDHCHKLGHTIDRCFALHESFNLKSSLEEHTQWITDVRFCPSMPRLATSSADKTVRVWDADNPGYSLRTFTGHATTAFSLDFHPNNDDLICSCDNSEIRYWSIKNGSCAGVFKGGVSQIRFQPCFGKLLAAAADNLISILDVETLGCSLKMEGHNNPVRTVCWDSSGKYLASVSDDLVRVWTVGSGGEGQCIRELNEFGMKFNTCVFHPFSPMLVIGCHKTLQLWDFIENKTVTLSAHNKLVSSLAVSNVTGLVASASHDKSFKIWK. 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01195 982 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Seca11g01195 982 ProSiteProfiles Trp-Asp (WD) repeats profile. 866 898 IPR001680 GO:0005515
Seca11g01195 982 CDD WD40 734 982 - -
Seca11g01195 982 ProSitePatterns Trp-Asp (WD) repeats signature. 761 775 IPR019775 -
Seca11g01195 982 Gene3D - 829 982 IPR015943 GO:0005515
Seca11g01195 982 Gene3D - 728 828 IPR015943 GO:0005515
Seca11g01195 982 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 785 822 - -
Seca11g01195 982 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 950 982 - -
Seca11g01195 982 MobiDBLite consensus disorder prediction 370 422 - -
Seca11g01195 982 MobiDBLite consensus disorder prediction 684 714 - -
Seca11g01195 982 Pfam WD domain, G-beta repeat 739 774 IPR001680 GO:0005515
Seca11g01195 982 Pfam WD domain, G-beta repeat 533 558 IPR001680 GO:0005515
Seca11g01195 982 Pfam WD domain, G-beta repeat 781 817 IPR001680 GO:0005515
Seca11g01195 982 Pfam WD domain, G-beta repeat 863 896 IPR001680 GO:0005515
Seca11g01195 982 Pfam WD domain, G-beta repeat 946 982 IPR001680 GO:0005515
Seca11g01195 982 SMART Lish 8 40 IPR006594 GO:0005515
Seca11g01195 982 MobiDBLite consensus disorder prediction 330 345 - -
Seca11g01195 982 SMART WD40_4 735 774 IPR001680 GO:0005515
Seca11g01195 982 SMART WD40_4 943 982 IPR001680 GO:0005515
Seca11g01195 982 SMART WD40_4 859 897 IPR001680 GO:0005515
Seca11g01195 982 SMART WD40_4 523 562 IPR001680 GO:0005515
Seca11g01195 982 SMART WD40_4 778 817 IPR001680 GO:0005515
Seca11g01195 982 SMART WD40_4 903 941 IPR001680 GO:0005515
Seca11g01195 982 SMART WD40_4 820 856 IPR001680 GO:0005515
Seca11g01195 982 MobiDBLite consensus disorder prediction 498 512 - -
Seca11g01195 982 MobiDBLite consensus disorder prediction 434 483 - -
Seca11g01195 982 MobiDBLite consensus disorder prediction 330 519 - -
Seca11g01195 982 ProSiteProfiles Trp-Asp (WD) repeats profile. 742 777 IPR001680 GO:0005515
Seca11g01195 982 ProSiteProfiles Trp-Asp (WD) repeats profile. 785 826 IPR001680 GO:0005515
Seca11g01195 982 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 742 777 - -
Seca11g01195 982 PANTHER TRANSCRIPTION ACTIVATOR MSS11 735 982 - -
Seca11g01195 982 Pfam LisH 10 36 IPR006594 GO:0005515
Seca11g01195 982 SUPERFAMILY WD40 repeat-like 523 982 IPR036322 GO:0005515
Seca11g01195 982 ProSiteProfiles Trp-Asp (WD) repeats profile. 950 982 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01195 Seca-Chr11 12652147 12665401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01195 780 981 Miscellaneous Gene Families AT5G08390 22.967 3.60e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Seca11g01195 WD40 0.014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01195 - - gmx:100801265 547.354