Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01190 ATGGCTTCACCATCCGAACTAAGCCTTGATTGCAAGCCTCATAGCTATTCCATGTTACTCAAATCATTTGGAGATCAAAATCAAACTGATCAGAATCAGACCCACCATAAGCTTGAGGAGTTCCTTTCTCGCTTAGAGGAAGAACGTCTCAAGATTGATGCTTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCACCAATGCCATGGAGGCTTCAAGGCAACAACTTCAGGCCTTCAGAGTGAATCAAAGCACAAGGCCAGTTTTGGAAGAATTCATACCAGTGAAGCATTTGACCTCTGAAAGCTCTGAGAAGGCAACAAACATGTCTGATAAGGCAAATTGGATGACATCTGCTCAATTATGGAGCCAAACAAGTGAAGGAACCAAACAACAATCCACAATCACATCACCTAAAGAAGCTGATATTGGATTCAGCATAAGCCCCAAACTAGTTCTAGACAACAAACAGAGGAATGGTGGAGCTTTTCTTCCATTCTCAAAGGAAAGAAACTCCTCCTGCCAATTAGGCTCTGCATTGAGGGGTCTCCCTGAGTTAGCCCTTGCCTCTGCAGAGAAAGAAATGGAAGACATTAAGAAACATGCAGAGGCAGAGAAGGGAGTAGTAGTCTCATGTCAGATTCAGAAGAAGGAGAATAATTCAAGCAATGATGGAGCATTAGTTGATCAAGGTAAAGGGAATAATAATCAAGTTGCATCCAATGCTCAAACAACCACAACCAGTAATAGCACCACAACCTCCCAAACTCATAGGAAAGCAAGAAGATGCTGGTCACCAGACTTGCACCGTAGATTTGTCAATGCCCTTCAAATGCTTGGTGGATCTCAAGTGGCAACTCCAAAACAAATAAGGGAATTGATGAAAGTTGATGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACAAGAAGGCCCAGCCCAAGCCCACAAACAGGTGCACCGGCGGCACAGCTCGTGGTCCTAGGAGGAATATGGGTCCCACCGGAATATGCTACAGCGGCAGCCCATACAGCCACCCCTGCCCTCTATGGCGCGCATCCTTCATCCCACGCGCCGCCGCCACACTACTGTGCTGCTCAAGAGTTCTACACTGCCGCGCCGACGCAGCCGCTGCTTCCGCCGCCTCCGGCGCACCACCACATGCATGTGTACAAAACGATGGCACATGGACAGAGCTCGCCGGAATCGGGCGGGGACAGGTCGGAGAGTATCGAGGATGGGAAATCGGAGAGTAGTAGCTGGAGGGGAGAGAGTGAAGGGGACAGAAAAGGGTTGGCTGAGGAGAGTAATGGGAGTGAGATCACTCTCAAATTCTAG 1359 0.479 MASPSELSLDCKPHSYSMLLKSFGDQNQTDQNQTHHKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFRVNQSTRPVLEEFIPVKHLTSESSEKATNMSDKANWMTSAQLWSQTSEGTKQQSTITSPKEADIGFSISPKLVLDNKQRNGGAFLPFSKERNSSCQLGSALRGLPELALASAEKEMEDIKKHAEAEKGVVVSCQIQKKENNSSNDGALVDQGKGNNNQVASNAQTTTTSNSTTTSQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQTGAPAAQLVVLGGIWVPPEYATAAAHTATPALYGAHPSSHAPPPHYCAAQEFYTAAPTQPLLPPPPAHHHMHVYKTMAHGQSSPESGGDRSESIEDGKSESSSWRGESEGDRKGLAEESNGSEITLKF. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01190 452 MobiDBLite consensus disorder prediction 220 262 - -
Seca11g01190 452 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 317 IPR017930 -
Seca11g01190 452 SUPERFAMILY Homeodomain-like 257 318 IPR009057 -
Seca11g01190 452 MobiDBLite consensus disorder prediction 220 260 - -
Seca11g01190 452 MobiDBLite consensus disorder prediction 413 442 - -
Seca11g01190 452 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 429 IPR044787 GO:0003700|GO:0006355
Seca11g01190 452 NCBIfam myb-like DNA-binding domain, SHAQKYF class 260 315 IPR006447 GO:0003677
Seca11g01190 452 MobiDBLite consensus disorder prediction 401 452 - -
Seca11g01190 452 FunFam Myb family transcription factor 259 317 - -
Seca11g01190 452 Coils Coil 189 209 - -
Seca11g01190 452 Gene3D - 259 317 - -
Seca11g01190 452 Coils Coil 38 58 - -
Seca11g01190 452 Pfam Myb-like DNA-binding domain 262 313 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01190 Seca-Chr11 12556871 12559317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01190 1 452 G2-like Transcription Factor Family AT2G03500 52.083 6.76e-137 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca11g01190 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01190 - - gmx:100807925 628.632