Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01188 ATGACGATGGACGACGAGAGCTCCATATATGTTGGGGGTCTTCCCTACGACGCCACCGAAGATACAATTCGCACTGTCTTCAATTTGTATGGTGCCATCCTTGATGTCAAGATTATCAATGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCAGCAATCGATGCCATAAACGACATGAATGGCAGAACTATTGGTGGGCGTGTGGTTAAAGTTAATGGGGTGAGGACTCGTGGTGGTAGATCAAATTTTGGCAGAGAACGTTATTATGGTGAGAGGAATGGAGACTGGGATCGTGGCAGAGATCGAGAACATGATTATGATTATGATCATGATCATGATAGGGATGGATACAGAAATCGGAGCCGTGATAGGTCTCGAGACCGAGATAGGTCCAGAGACCGTGACCAAGACAAGAATAGAAGAATTGAAAGTATACATGAGTATGATGAAGCTAGAGAACCTATATTAGATAATGATTGGAGTCAAGAGGATGACCGTGCTGAAAATGAACAAGAAAACACCAGGGCACATGGTGGAAATATGGATAGAGAGCACAACATTGATTTGGATACAGACAGGAAGATGGATAGGTTGAGTGATCCTGATAAAAGTTTTGATGAGCACAGAAAAGAACAGCCAAGGAGAATCAATGATTTGAATGCTACAAATCAACATAGCATGGATCTTTCATCAGATTCAAATGGTAATCACGATGATCAGGTAGAAGATGAATTAGAGAGGTCAATGCAACAGCTTGATCAACTAAAAAAGGAGGTTTGTAGTCTCTTCAGAACTCAAATGAAATAA 831 0.414 MTMDDESSIYVGGLPYDATEDTIRTVFNLYGAILDVKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIGGRVVKVNGVRTRGGRSNFGRERYYGERNGDWDRGRDREHDYDYDHDHDRDGYRNRSRDRSRDRDRSRDRDQDKNRRIESIHEYDEAREPILDNDWSQEDDRAENEQENTRAHGGNMDREHNIDLDTDRKMDRLSDPDKSFDEHRKEQPRRINDLNATNQHSMDLSSDSNGNHDDQVEDELERSMQQLDQLKKEVCSLFRTQMK. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01188 276 PANTHER GEO13361P1-RELATED 5 149 - -
Seca11g01188 276 MobiDBLite consensus disorder prediction 88 224 - -
Seca11g01188 276 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 193 - -
Seca11g01188 276 MobiDBLite consensus disorder prediction 88 254 - -
Seca11g01188 276 MobiDBLite consensus disorder prediction 225 242 - -
Seca11g01188 276 SUPERFAMILY RNA-binding domain, RBD 4 110 IPR035979 GO:0003676
Seca11g01188 276 Coils Coil 246 266 - -
Seca11g01188 276 CDD RRM_SF 9 80 - -
Seca11g01188 276 Gene3D - 2 117 IPR012677 -
Seca11g01188 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Seca11g01188 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Seca11g01188 276 SMART rrm1_1 8 80 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01188 Seca-Chr11 12551547 12553080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01188 7 106 Eukaryotic Initiation Factors Gene Family AT1G71770 28.000 2.50e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01188 - - gmx:100816804 382.874