Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01187 ATGAAGGATCCAGTGGAGGATCAAGTGAAATCATCTGGGAGGGCTCTGCAGAAGTCCTCGGAGCTTAGAAGAAAAGGTAGTAGTAGAAGAAGAAGCCAGTGTAAACAAGAGAAATTACAAGTAACAGGACTTGATTCACAACTGGGTTCATCTGCTTCTTGTAAAAGTCTTGTCTTTCCTGCAAGGCCTGGCTATGGCCAGCTTGGGACAAAGTGTTTGGTTAAAGCAAATCATTTCCTAGCAGATATATCAGCATCGGACTTGAGCCATTACACTGTTATGATAACTCCTGAAGTTACTTCTCGTAAAACAAGCAAAGCTATCATAGCAGAGTTAGTGAGGCTTCACAGGAACACTGACTTGGGGATGAGGCTTCCTGTATATGATGGTGGAAGAAATCTCTACACTGCTGGGTTGCTTCCTTTTGCATACAAAGAGTTCACCATACTATTGAGTGAGGATGATGAGGGTACTGGTGGTATCAGTCATTTTTGTGTCAGGGAAAGAGAATTTGAAGTGGTAATCAAGTTTGCAGCTCGTGTTAGTATGCATCAATTACGTGAGCTTCTCAGTGGGAAACAAGTGGACACCCCACAAGAGGCTCTTACTGTCATTGACATTGTGTTGAGGGAGCTTGCGGCTCAGAGCTACGTATCAATTGGGAGGTTTCTATATTCTCCAGATTTAAGGAAACCACAACAGTTGAGTGGTGGCCTGGAATCATGGCGTGGTTTCTACCAGAGTATAAGGCCTACTCAAATGGGATTGTCCCTTAATATTGACATGTCTTCAATGGCTTTTATAGAACCACTCCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTGTACTCAAAGCCATTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTAAGGGGTGTGAAAGTTGAAGTCACACATAGAGGAAGTTTTCGAAGGAAGTACAGGATATCAGGATTGACATCACAGCCTACAAGGGAGCTCAATTTCCCCCTGGATGAGAAAATGAACATGAAATCAGTAGTTGATTACTTTCAAGAAATGTATGGATATACAATCATATATACTCATCTACCCTGCCTTCAAGTAGGAAGCCAAAAGAAGGTGAACTATTTACCCATGGAGGCATGCAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTTTGCTGAAGGTATCATGCCAGAGACCACGTGAACAAGAGACAGATATTCTACAGACAATTCAACAAAATGATTATGAATATAATCCCTATGCAAAGGAATTTGGTATCAGCATAGACAGCAAGCTTGCATCAGTTGAGGCTCGGGTTCTTCCAGCACCATGGTTGAAATATCACGACAATGGAAGAGAGAAAGAATACTTGCCACAAGTTGGTCAATGGAACATGATGAACAAGAAAGTTATAAACGGAAGCACGGTGAGATATTGGGCATGTATCAATTTCTCTAGAAGTGTCCAAGAAAGTACAGCTCGTGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGAATTCAGTCAGGACCCTGTGATTCCTGTATATTCAGCAAGACCAGATATGGTAAAGAAGGCCTTGAAGTATGTACATTCTGCTTCTCTAGACAAACTTGGTGGAAAAGAGCTAGAGTTGTTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGGTATGATTCTAAGTCACGCCATTCAGTGGAGGATAACTCCATATTTGATGCTTGCACTAAAGAAACAAATTCTTCCTTCAGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGATTGATTTCCCAGTGCTGTCTTACAAAACACGTATTCAAGATTAATAGACAGTATTTGGCAAATGTGGCACTAAAGATCAATGTCAAGATGGGAGGAAGGAACACAGTACTTTTGGATGCTCTAAGTTGGAGGATCCCATTGGTTAGTGACATTCCAACAATAATTTTTGGAGCTGATGTTACTCATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCAGAAGTAACAAAGTATGCAGGATTGGTATGTGCTCAGCCTCATCGTGAAGAACTCATTCAAGATCTTTTCAAATGTTGGAAGGATCCTCATCATGGCATAGTTTATGGTGGCATGATCAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGCTATATGAGCTTGATGCAATCCGTAAGGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGGCATCACACCAGACTTTTCTCAAACAATCATGATGACAGAAACAGCACTGATAAGAGTGGGAATATCTTGCCTGGTACTGTAGTGGATTCAAAGATCTGTCATCCTACTGAATTCGACTTCTATTTATGTAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCTCATTATCATGTTTTATGGGACGAGAACAATTTCACTGCTGATGAGATTCAGTCTCTAACCAACAACTTATGCTACACATATGCAAGATGTACACGATCTGTTTCTGTAGTGCCTCCTGCGTACTATGCTCATCTGGCAGCTTACAGAGCTCGATTCTATATGGAACCTGATGTCCGTGAAATTGCTAAATCCCGAGGTGGAAGATCAAAAAATGAGTCAGTTCGGCCACTGCCAGCTCTGAAAGAGAAGGTGAAAAATGTAATGTTTTACTGTTGA 2769 0.4182 MKDPVEDQVKSSGRALQKSSELRRKGSSRRRSQCKQEKLQVTGLDSQLGSSASCKSLVFPARPGYGQLGTKCLVKANHFLADISASDLSHYTVMITPEVTSRKTSKAIIAELVRLHRNTDLGMRLPVYDGGRNLYTAGLLPFAYKEFTILLSEDDEGTGGISHFCVREREFEVVIKFAARVSMHQLRELLSGKQVDTPQEALTVIDIVLRELAAQSYVSIGRFLYSPDLRKPQQLSGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVYSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRISGLTSQPTRELNFPLDEKMNMKSVVDYFQEMYGYTIIYTHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQQNDYEYNPYAKEFGISIDSKLASVEARVLPAPWLKYHDNGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPVIPVYSARPDMVKKALKYVHSASLDKLGGKELELLIAILPDNNGSLYGMILSHAIQWRITPYLMLALKKQILPSGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHHGIVYGGMIRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVREIAKSRGGRSKNESVRPLPALKEKVKNVMFYC. 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01187 922 Gene3D paz domain 265 389 - -
Seca11g01187 922 MobiDBLite consensus disorder prediction 17 36 - -
Seca11g01187 922 Pfam Piwi domain 598 885 IPR003165 GO:0003676
Seca11g01187 922 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 58 887 - -
Seca11g01187 922 SMART DUF1785_2 218 270 IPR014811 -
Seca11g01187 922 SUPERFAMILY PAZ domain 266 425 IPR036085 GO:0005515
Seca11g01187 922 Gene3D - 655 922 IPR036397 GO:0003676
Seca11g01187 922 ProSiteProfiles Piwi domain profile. 587 886 IPR003165 GO:0003676
Seca11g01187 922 MobiDBLite consensus disorder prediction 1 39 - -
Seca11g01187 922 Pfam Mid domain of argonaute 468 545 IPR032473 -
Seca11g01187 922 SMART PAZ_2_a_3 275 407 IPR003100 GO:0005515
Seca11g01187 922 SUPERFAMILY Ribonuclease H-like 549 887 IPR012337 -
Seca11g01187 922 Pfam PAZ domain 296 401 IPR003100 GO:0005515
Seca11g01187 922 Pfam Argonaute linker 2 domain 413 457 IPR032472 -
Seca11g01187 922 Gene3D - 449 649 - -
Seca11g01187 922 ProSiteProfiles PAZ domain profile. 271 385 IPR003100 GO:0005515
Seca11g01187 922 FunFam Protein argonaute-2 264 390 - -
Seca11g01187 922 CDD Piwi_ago-like 429 885 IPR045246 -
Seca11g01187 922 Pfam N-terminal domain of argonaute 71 209 IPR032474 -
Seca11g01187 922 CDD PAZ_argonaute_like 270 384 - -
Seca11g01187 922 SMART Piwi_a_2 586 886 IPR003165 GO:0003676
Seca11g01187 922 Pfam Argonaute linker 1 domain 219 268 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01187 Seca-Chr11 12506821 12517931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01187 55 922 Eukaryotic Initiation Factors Gene Family AT5G43810 70.391 0.0 1331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01187 K11593 - gmx:100808457 1636.7