Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01186 ATGATGCCTCAGTACTCTTCCCTCCACAATTCACAACTCTCTTCCTGCGACTCCAACCACACCTCATCTTCACCCTCTCAATCTCATCTCTCTGAACTAACCGAAGAAGAAGACTCAGGGATAAGGCTAGTGCACATGCTCATCTCCTGTGCCGATTCTCTCCAACGTGGCAACCTCTCCCTCGCTGTTTCCCTCCTCCACGCCATGCAATCTCTCCTTCAACACCTCACCACCGATTCCGGAATCGGAAAAGTCGCCACCTACTTCATCCACGCCCTCGCCACCAGGATATTCGCGCCACAACACACACAAATTACACACCGACTAAACGACGACGTTCTCTACCACCACTACTACGAGGCTTGTCCTTACCTCAAGTTCGCTCACTTCACCGCCAATCACGCCATCCTTGAAGCCTTCAACGGCCACCACTCCCTCCACGTCATCGACTTCGACCTCATGCACGGCCTCCAATGGCCGCCTCTCATCCACGCCCTCTCCCTCCGTCAAGGAGATCCTCCCTCCCTCCGCTTGACCGCCGTTGGTCCTCCCTCGCCGGCGCTCCGACAAATCGGCCTTCGACTCACCGACATGGCTCGTTTCGTCAACCTCCGGTTCGTGTTCCGCAGTGTTCCGGCGTCGCGGCTCGAGGACGTGAAACCGTCGATGCTGCAGGTGAATACGAAGGAAGCGGTGGCGGTGAACTCCATCATGCAACTCCACCGTCTCCTCGGGTCTGATCCGACCCGTAGAGACTCTGAATCGGGTATTGATTTTGTGCTTGGTTGGATCCGGAGGCTGAACCCGAAAATCATGACGGTGGTTGAGCAAGAAGCGAATCACAATCAGACCGGGTTCTTGGAGCGGTTCACTGAAGCGTTACATTATTATTCGGCTGTTTTTGACTCGCTGGAGGTTTGTCCGGTCGAACCGGATAAGGCTATGGCTGAGATGTACCTTCAGAGGGAGATTTGCAACGTGGTGGGCTGTGATGGACCGGCTCGGGTGGAGAGACACGAGCCGCTGGTGAAATGGAAGGCTCGGCTCGGGAAAGCGGGGTTTAAGAGTGTGGATTTAGGTTCGGATGCGCTGAAGCAAGCGAGGATGCTGTTGAGTCTGTTTTCGGCTGAGGGTTACAGCGTGGAAGAGAGAGAAGGGTGTTTAACGCTGGGTTGGCATAATAAACCTCTCATTGCGGCTTCGGCTTGGCAAGCTGAGCCCCTACCTCAGAGTGAGTGA 1239 0.5521 MMPQYSSLHNSQLSSCDSNHTSSSPSQSHLSELTEEEDSGIRLVHMLISCADSLQRGNLSLAVSLLHAMQSLLQHLTTDSGIGKVATYFIHALATRIFAPQHTQITHRLNDDVLYHHYYEACPYLKFAHFTANHAILEAFNGHHSLHVIDFDLMHGLQWPPLIHALSLRQGDPPSLRLTAVGPPSPALRQIGLRLTDMARFVNLRFVFRSVPASRLEDVKPSMLQVNTKEAVAVNSIMQLHRLLGSDPTRRDSESGIDFVLGWIRRLNPKIMTVVEQEANHNQTGFLERFTEALHYYSAVFDSLEVCPVEPDKAMAEMYLQREICNVVGCDGPARVERHEPLVKWKARLGKAGFKSVDLGSDALKQARMLLSLFSAEGYSVEEREGCLTLGWHNKPLIAASAWQAEPLPQSE. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01186 412 MobiDBLite consensus disorder prediction 1 34 - -
Seca11g01186 412 Pfam GRAS domain family 43 404 IPR005202 -
Seca11g01186 412 MobiDBLite consensus disorder prediction 1 30 - -
Seca11g01186 412 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 33 400 IPR005202 -
Seca11g01186 412 ProSiteProfiles GRAS family profile. 34 404 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01186 Seca-Chr11 12501594 12502832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01186 33 404 GRAS Transcription Factor Family AT1G14920 50.919 2.52e-133 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca11g01186 GRAS 1.8e-119 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01186 K14494 - gmx:100805968 533.872