Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01177 ATGAAAGGGGAAGTGCAGCTTCAACCTCCATCGGTTCTGCAAAACCCTAGTGATTCCGACCCTTTACTCGATAATCAGGAGGCAGATGAGTCCCCTGGATCAAGCTCTAGTGAGATTAAGGATGAGGACGACGTTGAGGCTGGCTCACTCCCTTGTTGTCGAATTTGCCTGGAAAGCGATTCCGACCCAGAGGATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAACAGTTTGTCCACCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGATTTGCCTTCTCACACTGCACCACTTGCAAAGCACAATTTCATCTTAGAGTTGAAATGTTTGAGGATAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAAACTGTAATTGCTGCTATTGGCGGCTTTGCGTACATCATGGACAAAGATGGGACCTTCAGGAACTCATTTGATGATGGTTGGGATAGGATACTGTCAAAGCATCCTATACCATTTTATTATTGTATTGGTAAGCTGTTATGGCTACTGGAATTGTTTGCTTTAAACCAATGGTCTGATGGTTTAATCCATATACCAGGAGTGCTGGCCTTCTTTGTACTGATTGGATTTTTTGGTCTCATACTGCATTGCTCTTCCCTCAATTCCAATGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATCTTGGATTGCTTTCCTGCATCAATGGAGGCGTGCTTTGCCCTTGTGGTTGTTTTTGTTGTCATCTTTGCAATTCTTGGTATAGCTTATGGTTTTCTTGCAGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACGAAGGAATACATAGTAGAGGATCTTCGTGGCTGTTATTTCCCACCAAAATTAGACCCAGAACATGAAAGTCGCTTGAAAATGCTTAAGCTTTTGTGA 996 0.4388 MKGEVQLQPPSVLQNPSDSDPLLDNQEADESPGSSSSEIKDEDDVEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVEMFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRILSKHPIPFYYCIGKLLWLLELFALNQWSDGLIHIPGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLRGCYFPPKLDPEHESRLKMLKLL. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01177 331 SUPERFAMILY RING/U-box 50 108 - -
Seca11g01177 331 SMART ringv_2 52 104 IPR011016 GO:0008270
Seca11g01177 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 118 IPR013083 -
Seca11g01177 331 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 331 - -
Seca11g01177 331 MobiDBLite consensus disorder prediction 1 45 - -
Seca11g01177 331 MobiDBLite consensus disorder prediction 8 33 - -
Seca11g01177 331 ProSiteProfiles Zinc finger RING-CH-type profile. 45 110 IPR011016 GO:0008270
Seca11g01177 331 CDD RING_CH-C4HC3_MARCH 53 104 - -
Seca11g01177 331 Pfam RING-variant domain 53 103 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01177 Seca-Chr11 12304866 12309306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01177 1 331 C3H Transcription Factor Family AT1G11020 74.419 2.74e-166 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01177 - - gmx:100818950 581.637