Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01176 ATGCTTCGCCTTTGGCGTCTTCGAAGAGTTAGTGCTTTGTTTTCAAGGCTTGAGAAGGACAGAAACTTTAACTACTTTTGGGTTCGGTGTGCCAAGCTTATCTGTGTTACCCTTTTTGCTGTTCATTGTGCTGGATGCTTTTATTATCTCCTTGCTGCACGTTATCATGATCCCAAAAACACATGGATTGGGCAATCAATGGATAATTTCCTAGAGCAGAGCTTGTGGACAAGATATGTGACATCTATTTACTGGTCTATTACTACTTTAACAACGGTTGGTTATGGGGATCTGCATCCAGTGAATCAAAGGGAGATGGTCTTTGACATCTTTTACATGCTCTTCAATCTGGGCTTAACAGCATATCTGATTGGTAATATGACGAACTTAGTTGTCCATGGCACAAGTCGAACTAGAAAATTTAGGGATACCATACAAGCTGCATCAAGTTTTGCTCAAAGGAATCAATTGCCTCATCGTCTGCAAGATCAAATGCTTGCTCACTTGTGTTTGAAGTTTAGAACAGATTCTGAAGGGTTGCAGCAGCAAGAGACACTTGAATCTCTTCCTAAAGCCATCAGATCAAGCATTTCACATTACCTTTTCTATTCTCTGATGGATAAGGTCTATTTGTTTCGTGGAGTTTCAAATGACTTGCTCTTTCAATTGGTGTCAGAGATGAAACCCGAGTATTTTCCACCCAAAGAAGATGTTATCTTGCAGAATGAAGCCCCCACTGATTTTTATATTCTAGTCACCGGTGCTGTGGACCTACTAGTTCTTAAAAATGGGGTTGAACAGGTTGTTGGAGAGGCAAAAACTGGAGATCTTTGTGGTGAGATTGGTGTGCTCTGCTATAAGCCACAGCATTTCACAGTTAGAACAAAACGATTAAGTCAGCTGCTGAGGCTGAACCGTACTACATTCTTGAATATTGTTCAGGCCAATGTTGGGGACGGAACCATAATCATGAATAATCTCCTTCAGCATTTGAAAGAGCTGAATGATCCAATAATGGAGGGAGTTTTGGTGGAGACTGAGAACATGTTAGCTCGTGGTAGGATGGACCTACCAGTAAGTCTATGCTTTGCAGCAGTAAGAGGGGATGATTTGCTGTTACATCAATTGCTAAAACGGGGCCTGGATCCAAATGAATCCGACAACAATGGAAGGACAGCCTTGCATATAGCAGCATCCAAAGGAAAAGAGAACTGTGTTTTGCTTCTGCTAGATTATGGGGCAGATCCGAATACTAGAGATTCCGATGGAAATGTACCACTATGGGAAGCTATAGTTGGTGGATATGAATCAGTGACCAAGCTGTTGGTAGAAAATGGCGCTACCTTGCAATGTGGTGATGTGGGTCAATTTGCATGCACTGCTGCTGAACAGAACAATCTCAACTTGCTCAAGGACATGGTACGTCATGGAGGAGATATCACACTATCAAACAGCAACGTTGGGACCACAGCTCTGCACGTTGCAGTCTCCGAAGACAATGTTGAGATTGTCAAATTCCTTTTAGATCACGGGGCTAACATTGACCAACCAGACAAGCATGGTTGGACCCCAAGAGATCTAGCAGATCAACAAGGACATCAAGATATTAAGGCCATTTTTGAGTCCACTGGTGAGCCTAAGGCTCAGTCTTTTGTTGCTATTCCTGAGAGGCAGCAGAGTAAGATCAGGTTCCTAGGCAGATTCACAAGTGAGCCAACAATGCCTTCACCCAATGATGGCTCATTTCATGGAACAGATGGCTCTTGGAGCCAAAGCCGTCCAAGGCGTAGGAGTAATAACTACCACAACTCACTCTTTGGGATAATGACTGCAGCACACAAAGGGGATAATGACCTGCTTTTCTCTGTTAACATGAATAACATTGCAAAGAATGGTATGAAGAGTAGAGTTCTCCCAACTAGAGTAACAATTAGTTGCCCTGAAAAGGGTGAGGTTTCTGGGAAGCTTGTATTACTACCTGGAAGCTTTAAAGAGCTACTTGAGATTGGAGCTAAAAAATTTGGTGTCTTTCCTGCTAAGGTTGTGTGCAAGGATGGAGCTGAAATTGATGATATAGAGGTGATTAGAGATGGTGACCATCTTGTTTTTGTCAGTGCTGGTGGGGTGCTAGAATCCAATTGTCCACAACACACCAATGGTGTACTTCCATAG 2172 0.4277 MLRLWRLRRVSALFSRLEKDRNFNYFWVRCAKLICVTLFAVHCAGCFYYLLAARYHDPKNTWIGQSMDNFLEQSLWTRYVTSIYWSITTLTTVGYGDLHPVNQREMVFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPHRLQDQMLAHLCLKFRTDSEGLQQQETLESLPKAIRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGDLCGEIGVLCYKPQHFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVETENMLARGRMDLPVSLCFAAVRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGKENCVLLLLDYGADPNTRDSDGNVPLWEAIVGGYESVTKLLVENGATLQCGDVGQFACTAAEQNNLNLLKDMVRHGGDITLSNSNVGTTALHVAVSEDNVEIVKFLLDHGANIDQPDKHGWTPRDLADQQGHQDIKAIFESTGEPKAQSFVAIPERQQSKIRFLGRFTSEPTMPSPNDGSFHGTDGSWSQSRPRRRSNNYHNSLFGIMTAAHKGDNDLLFSVNMNNIAKNGMKSRVLPTRVTISCPEKGEVSGKLVLLPGSFKELLEIGAKKFGVFPAKVVCKDGAEIDDIEVIRDGDHLVFVSAGGVLESNCPQHTNGVLP. 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01176 723 Pfam Cyclic nucleotide-binding domain 230 315 IPR000595 -
Seca11g01176 723 Pfam Ion transport protein 1 138 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca11g01176 723 SUPERFAMILY cAMP-binding domain-like 136 331 IPR018490 -
Seca11g01176 723 ProSiteProfiles Ankyrin repeat region circular profile. 389 420 - -
Seca11g01176 723 ProSiteProfiles Ankyrin repeat profile. 487 519 IPR002110 GO:0005515
Seca11g01176 723 SUPERFAMILY Voltage-gated potassium channels 2 168 - -
Seca11g01176 723 SMART cnmp_10 211 328 IPR000595 -
Seca11g01176 723 PRINTS Ankyrin repeat signature 503 517 IPR002110 GO:0005515
Seca11g01176 723 PRINTS Ankyrin repeat signature 390 405 IPR002110 GO:0005515
Seca11g01176 723 ProSiteProfiles Ankyrin repeat region circular profile. 487 519 - -
Seca11g01176 723 CDD CAP_ED 211 316 IPR000595 -
Seca11g01176 723 ProSiteProfiles Ankyrin repeat profile. 422 454 IPR002110 GO:0005515
Seca11g01176 723 Pfam Ankyrin repeats (many copies) 474 528 IPR002110 GO:0005515
Seca11g01176 723 ProSiteProfiles Ankyrin repeat profile. 389 421 IPR002110 GO:0005515
Seca11g01176 723 Gene3D Jelly Rolls 175 336 IPR014710 -
Seca11g01176 723 PRINTS EAG/ELK/ERG potassium channel family signature 123 132 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca11g01176 723 PRINTS EAG/ELK/ERG potassium channel family signature 105 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca11g01176 723 PRINTS EAG/ELK/ERG potassium channel family signature 79 96 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca11g01176 723 Gene3D - 357 541 IPR036770 -
Seca11g01176 723 ProSiteProfiles cAMP/cGMP binding motif profile. 211 313 IPR000595 -
Seca11g01176 723 Pfam Ankyrin repeats (3 copies) 362 450 IPR002110 GO:0005515
Seca11g01176 723 Gene3D - 1 132 - -
Seca11g01176 723 SMART ANK_2a 422 451 IPR002110 GO:0005515
Seca11g01176 723 SMART ANK_2a 389 418 IPR002110 GO:0005515
Seca11g01176 723 SMART ANK_2a 453 482 IPR002110 GO:0005515
Seca11g01176 723 SMART ANK_2a 356 385 IPR002110 GO:0005515
Seca11g01176 723 SMART ANK_2a 487 516 IPR002110 GO:0005515
Seca11g01176 723 Pfam KHA, dimerisation domain of potassium ion channel 641 703 IPR021789 -
Seca11g01176 723 SUPERFAMILY Ankyrin repeat 360 543 IPR036770 -
Seca11g01176 723 ProSiteProfiles KHA domain profile. 641 721 IPR021789 -
Seca11g01176 723 PANTHER POTASSIUM CHANNEL AKT1 1 705 IPR045319 GO:0005249|GO:0006813
Seca11g01176 723 MobiDBLite consensus disorder prediction 568 596 - -
Seca11g01176 723 FunFam Potassium channel KAT2 199 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01176 Seca-Chr11 12295118 12301693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01176 1 705 Ion Channels AT2G26650 70.986 0.0 1038
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01176 K21867 - gmx:100819491 1254.2