LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g01162	ATGAACAACAATTATAGTGATAGAGGCAATGATAGTTCTGATGAAAGTCATAGTGAAGATAACAATGATGTGGGTAATCAGAATGAGGCAGTGGACGAAGATTTAACATATGAACAGTATAAAAGTATAATAGACCTAACTGCGAATGACATTCGAGGTATGGAGTTTGGTAGTGAAGAGCATGCATGTAAATTTAATGATTCATATGCTAGGTGTCATGGATTTGTTGCAAGAAAAGATGATATAAAACGTGATGCGGAAGACAATATTATAATGCGTCAATTGGTTTGCAACAAAGAGGGGTTGAGAAATAAAAAGCACTTTATAAGGTTGGATAGAAAGAGACCTCATAGGCCAATCACTCGTACTAGTTGTCAAGAGACTCATAATCATTATTTATGTCCACCAAAATATAGACACTTAATCCCTGCACATCGCAAGATGGGTGATACAGATAAAGCTCAAGCGGAACGTTTGCATTCCTATGGAGTTAGGACTTGTCACATTATGGGATATATGTTGGCTCAGAAAGGTGGGTATAGTGTTTTAGGGTTTACCAAAAAGGATATGTACAATTATTTTAGTGAGAAAAACCGTGAGAAGATCAAAGATGGGGATGCATGCATTGCATTAAGTTATTTACAAGGCAAGGCAGATAATAATGGATTGATGCATTCATCATATTCATTTACAAGTGATGGTAAATTGAAGAATTTGTTCTGGGCAGATGAAGTTAGTAGAAGTGATTTTCAGTGCTTTGGTGATGTTCTAGCATTTGACACCACTTACAAAAAAAAACAAGTACAACAGACCTCTAGTGATTTTCTCCGGTTGCAATCATCATTCACAGACTGTTATATTTGGTTGTGCCTTGGTGAGTGA	882	0.3628	MNNNYSDRGNDSSDESHSEDNNDVGNQNEAVDEDLTYEQYKSIIDLTANDIRGMEFGSEEHACKFNDSYARCHGFVARKDDIKRDAEDNIIMRQLVCNKEGLRNKKHFIRLDRKRPHRPITRTSCQETHNHYLCPPKYRHLIPAHRKMGDTDKAQAERLHSYGVRTCHIMGYMLAQKGGYSVLGFTKKDMYNYFSEKNREKIKDGDACIALSYLQGKADNNGLMHSSYSFTSDGKLKNLFWADEVSRSDFQCFGDVLAFDTTYKKKQVQQTSSDFLRLQSSFTDCYIWLCLGE.	294

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g01162	293	Pfam	FAR1 DNA-binding domain	65	126	IPR004330	-
	Seca11g01162	293	PANTHER	OS01G0519700 PROTEIN	51	265	-	-
	Seca11g01162	293	MobiDBLite	consensus disorder prediction	1	32	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g01162	Seca-Chr11	12105725	12106666	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca11g01162		FAR1	2.6e-09	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g01162	-		-	ccaj:109792835	306.605