Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01138 ATGGCATGGTCCGAAAATGCTGCTTCCCATTTCCCTCAAAAGCTACCTCCCCGCACCTCTCGCCCCCGTTACGTCCCTCCACATCGCGCTAACGACGCCGTTTCACATTACAACAATCCAACTTCCTTTCCTTTCTCCGACGATGGCCTTAACCGTTCCGGTGACAGGCCACGTGGCCGTGGCGGTTCCCGTGGGGGCCGCCGAGGAGGTCGCCGGTATACTCGCACCGAAGAACAGCCTCGTGGCCGCGAGACTTTTTACCGGGACGATCGGTTCCCCTTCGAGGAAGCAGAAAACGCCGGCGTTACGAATTTTGATGCGTACGAATCGGTGCCGGTGGAGGCGAGCGGCGAGAATGTTCCACGGCCGGTGAATGCCTTCGCGGAAACTGACCTAGATGATGATTTGAAGAAGAACATCGAGCGATGCAAGTACGTGAAACCCACACCTGTTCAACGTCACGCCATACCTATTGCCGTTGCGGGTCGCGACTTGATGGCGTGTGCGCAGACCGGGTCGGGTAAAACGGCAGCGTTTTGTTTTCCTATTATATCTGGGATTCTGAAGGATCGTTCTGGTTCCACTAACGGGTTTTCTTCCATCCCTCGTAACGCCATTATTGCATATCCCACTGCTCTTATACTGTCCCCTACTAGGGAGTTATCATGCCAGATACATGCTGAAGCGAACAGGTTTGCATATCAAACAGGAGTGAAGATTGTAGTTGCTTATGGTGGAGCTTCCATTGGTCAGCAGCTGCGGAATTTGGAGAAAGGGGTTGACATATTGGTTGCAACTCCTGGGCGATTGGTGGATATGATTGAGAGAGAAAGGGTTTCTTTAACGAGGATAAAATATCTTGCTTTGGATGAAGCAGACCGTATGTTAGACATGGGTTTTGAGCATCAAATACGCAAGATTGTGGAGCAGATGCACATGCCCCCACCTGGTTCTAGACAGACAATGCTCTTTAGTGCTACATTCCCTGATGATATACAGAAGCTGGCGTCTGACTTTCTATCAAACTACATTTTTCTGGCTGTTGGAAGGGTTGGTTCAAGCACTGATCTGATTGCACAAAGATTTGAACTTGTACAGGATCAGGATACAGATAAAAGGAATCATCTTGTGGATCTTCTTTGTCGTCAAAGGGCACATGGAGCCAATGGGAAGCAAGCTCTAACTCTTGTATTTGTTGAAACTAAGAGAGGAGCTGATGCTTTAGAAGACTGGCTGTCGAGAAATGGGTTTCCGGCTATTGCAATACATGGTGATAAAGTTCAAATGGAGCGGGAACGAGCTTTAAGATCTTTCAAACGTGGTTTTACTCCGATTTTGGTAGCAACTGATGTTGCTTCCCGTGGTTTAGATATACCACATGTGGCTCATGTTATCAACTTTGACTTGCCTAGAGACATAGATGACTACGTACATAGGATTGGCAGAACAGGACGTGCTGGTAAATCTGGATTAGCTACTGCCTTCTTTAGCAACAAGAACATCCCTATTGCAAAAGCCCTTGTTGGACTTTTGCAGGAAGCTAAACAGGAAGTTCCACATTGGCTCTGCAAATACGCTGAGTGTTCATCATCTGGTGGTCGTAGTCATGGAGCTCAACGGTATGGCAGAGGCAATTATGGTGGCCGTGATTTCCGAAATCCCATAGAACCTGAGGTGGAGAATCGGAACTACAATGGCCGTGATTTCCGAAATTCCATTGAACCTGAGGTGGAGGATCGCAACTACAATACGTATGGCAATGCAGATCATGCTGTGGAAAACTACAATACATATGGCAATGCTGACCATGCTTTGGACTCTTCCCCTTACATTGACATGAAAAAATCTAATAGTGATTCCTCTTTTGACTTCAGGAACACAGTTTATACTGATGCTAATGCTGATTTGTATGAAGGTGGGAACGATGAAAATGGGCCATGTGGTTATAAATCTGTCGTTGCCAGTGGATGGGATTAG 1977 0.474 MAWSENAASHFPQKLPPRTSRPRYVPPHRANDAVSHYNNPTSFPFSDDGLNRSGDRPRGRGGSRGGRRGGRRYTRTEEQPRGRETFYRDDRFPFEEAENAGVTNFDAYESVPVEASGENVPRPVNAFAETDLDDDLKKNIERCKYVKPTPVQRHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGILKDRSGSTNGFSSIPRNAIIAYPTALILSPTRELSCQIHAEANRFAYQTGVKIVVAYGGASIGQQLRNLEKGVDILVATPGRLVDMIERERVSLTRIKYLALDEADRMLDMGFEHQIRKIVEQMHMPPPGSRQTMLFSATFPDDIQKLASDFLSNYIFLAVGRVGSSTDLIAQRFELVQDQDTDKRNHLVDLLCRQRAHGANGKQALTLVFVETKRGADALEDWLSRNGFPAIAIHGDKVQMERERALRSFKRGFTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSNKNIPIAKALVGLLQEAKQEVPHWLCKYAECSSSGGRSHGAQRYGRGNYGGRDFRNPIEPEVENRNYNGRDFRNSIEPEVEDRNYNTYGNADHAVENYNTYGNADHALDSSPYIDMKKSNSDSSFDFRNTVYTDANADLYEGGNDENGPCGYKSVVASGWD. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01138 658 CDD SF2_C_DEAD 358 496 - -
Seca11g01138 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 504 IPR027417 -
Seca11g01138 658 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 346 IPR014001 -
Seca11g01138 658 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Seca11g01138 658 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 97 526 - -
Seca11g01138 658 MobiDBLite consensus disorder prediction 553 573 - -
Seca11g01138 658 FunFam ATP-dependent RNA helicase RhlB 349 530 - -
Seca11g01138 658 MobiDBLite consensus disorder prediction 530 573 - -
Seca11g01138 658 MobiDBLite consensus disorder prediction 34 48 - -
Seca11g01138 658 Pfam Helicase conserved C-terminal domain 372 487 IPR001650 -
Seca11g01138 658 Pfam DEAD/DEAH box helicase 149 335 IPR011545 GO:0003676|GO:0005524
Seca11g01138 658 SMART ultradead3 144 361 IPR014001 -
Seca11g01138 658 Gene3D - 88 348 IPR027417 -
Seca11g01138 658 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 526 IPR001650 -
Seca11g01138 658 FunFam Probable ATP-dependent RNA helicase DDX4 89 348 - -
Seca11g01138 658 SMART helicmild6 406 487 IPR001650 -
Seca11g01138 658 MobiDBLite consensus disorder prediction 1 82 - -
Seca11g01138 658 Gene3D - 349 529 IPR027417 -
Seca11g01138 658 CDD DEADc_DDX3_DDX4 127 352 IPR044763 GO:0003724|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01138 Seca-Chr11 11934751 11938060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01138 123 505 Eukaryotic Initiation Factors Gene Family AT3G19760 32.468 1.09e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01138 K11594 - gmx:100817549 776.933