Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01129 ATGGTTGGAAGCAATGAATCAATGACAAGTGATACTCTAGAGTTACAGGAACGACAAGCTTCCGTAATCTACTTAGAAGAGGATGAGGAAATCCCCATAGAACATGGTGACGCATATTTCATTGATGAAGTAGGTGGTGGTGTATTCCTTGTTGATAATGATTGGGATGGTGAACAATCTGGAGAAGATGAACAATGGGATGAGCCTTGTACCGAAATTCCTGGTTTTGGGGATAGGGTCCCTAGATTTAGGATTGATAGTGAGGAGGATATTAAAGGGATGGACTTGAAGGCATTTAGTCCACATGAAATTGAAATGTATGACTTTGGTAGCATGGAATTGGCCTACAAGTTCTATAGTTCTTATGCAATGAGGAATGGATTTTGTGTTAGGAAATCATCTATTGTGAGAAGCAAAAAAACAAGGGAGCCATATCAACAAGAGTATGTTTGTAATAGAGCAGGCTTTAGACGGGATAATGGGAAAAGTGTTGAAGATATGAAACGTGAGCCTAGAGTTAATTTTAGATGTGGATGTTCTGCATTATTTCGTGTTCACATTGACTTTGTGACTTCCCGATGGTATTGTACTTGGTTTGATGATGATCACAACCATGATTTGTTGGATCCAATACACTGTGGGATGCTTCCAGCACATAGGAAGATGTCTGCTAGTGAAATAATGCAGATGAATGAAATGATGAAAGTTGGTATTAGTCCCCCTCACATTTATAGGTCATTTGCTTTGCAAGCCGGAGGTTATCAGAAAATTGGTTTTAGGAAGAAGGACTTGTATAACCAGATCCATCGTCAAAGGCGTGAGCAATGTTCAGATGCGGTGGAAGCTCTAAAATACTTGAAGGATATTGGAGGGAAGGATGGTAAGATGTACATTGAGCACACAGTTGATAGTGAAGGGAGACTCCAACATTTGTTTTGGAGTGATGGTATTAGTCAGTTAGATTATCAAGTTTATGGTGATGTTTTGGCATTTGACGCTACATATGGCAAGAACAAATATTATTTGCCATTGGTGGTTTTCTCAGGTGTTAATAATCACAATCGGTCTACTATTTTTGGAGGTGCCATAGTTTCAAATGAGACAGAGGAGACATATGTGTGGGTGTTGAATCAATTTGTAAAAGCTATGAAAGGAAAGGAGCCTAAAGCAGTCATCACTGATGGTGATAATGCAATGAGAAATGCAATTAAAAGGGTTTTTCCTAATGCACATCATCGTTTGTGTGCATGGCATTTGTTACGTAATGCAACATCCAATGTAGGAAAGCCCGGTTTCACAGCTGAGTTAAAGAAGTGCATGTTGGGTGATTATGATTTGGATGAGTTTAGCCAAGTTTGGGATGAAATGGTCAGCAAGTATCATTTGGAGGACAATCATTGGGTCAATGCACTGTATGAGAAAAGGTCAATGTGGGCTACAGCTCATATCCGGGGTAATTTTTTTGCAGGTTTTACCACAACATCTAGATGTGAGGGGCTACACTCAGAGTTGGCTAAGTTTGTGCACTCAAGGTACAACTTGACAGACTTCTTGCATCATTTTCACCATTGTTTAGAGCATATACGATTCAAAGAAAAGGAAGATGACTTCGCATCTCTACATGGGGACCCTGTGCTCCAAACCAAATACCCTTCCATTGAGAAATCTGTTGCAAAATATTTAACGAAGGAGTTGTTCATGAAATGTCGGTACTTTATTAACAAAGCAGCTGACTTTGTTGTAGTTGGCTGTTCAAAAACGCTAACAGTGTCCATTTTCACTGTTTGTAAGCGTGGAGGACGAGGCAAGGAATGGAAAGTGACACATGATGCAGGTAACAATGAATTTAAATGTGATTGCATGAGAATGGAGTCTCGGGGTTTGCCATGTGAACACCTAGTTGCCGTTCTTGTTCACTTGAGGATAAATGATCTTCCTAGGTGTTTTGTTTTGAAACGGTGGTCAAAAGGTGCGAAGGATGGTTTTTATGACCGTAATAGAGATGGAGACACTACATGGAATTCTTCACTGGTTTTTAGAAGTGATGAAGCGATGCATGTATGTAGATTGATTATTAAATTGAACGATACTGCCGAAGAACACCACGAATTTATGGAAAAGCTTTTACAAATCTATGAGGAACGCAAGGCTAGGAAATCATGCCTTAATGGGGATGGTAGTTCTTCCAACAGGTTTATGGTTGAAAATTTGAGGGATCCTGTATGTGTTAGGACCAAAGGTCGGGGTGGGGGAAAATCCACAACCTTTGGTTTAGCAGTGCGTAGGAGGAAAAAGTGCTCTATATGTAAGGTTCCTGGGCACAATAAGCTAACTTGTCCACACAGTCAAAGACAAGCACCATTGCATGAAAGTGAAGATGATGACATCTATTTCCCTACCCAAGACTTGGACACTGACATGATTCCTGGGCACAACCAGCACACTTGTCCACACAGTCAAAGAGAAGCACCATTGCATGAAAGTGAAGATGATGACATCTATTTCCCTACCCAAGACTTGGACACTGACATGATTCTTGGGCACAACCAGCACACTTGTCCACACAGTCAAAGAGAAGCACCATTGCATGAAAGTGAAGATGATGACATCTATTTCCCTACCCAAGACTTGGACACTGACATGATTGGTAGTCATATGTCAATGTGA 2667 0.4053 MVGSNESMTSDTLELQERQASVIYLEEDEEIPIEHGDAYFIDEVGGGVFLVDNDWDGEQSGEDEQWDEPCTEIPGFGDRVPRFRIDSEEDIKGMDLKAFSPHEIEMYDFGSMELAYKFYSSYAMRNGFCVRKSSIVRSKKTREPYQQEYVCNRAGFRRDNGKSVEDMKREPRVNFRCGCSALFRVHIDFVTSRWYCTWFDDDHNHDLLDPIHCGMLPAHRKMSASEIMQMNEMMKVGISPPHIYRSFALQAGGYQKIGFRKKDLYNQIHRQRREQCSDAVEALKYLKDIGGKDGKMYIEHTVDSEGRLQHLFWSDGISQLDYQVYGDVLAFDATYGKNKYYLPLVVFSGVNNHNRSTIFGGAIVSNETEETYVWVLNQFVKAMKGKEPKAVITDGDNAMRNAIKRVFPNAHHRLCAWHLLRNATSNVGKPGFTAELKKCMLGDYDLDEFSQVWDEMVSKYHLEDNHWVNALYEKRSMWATAHIRGNFFAGFTTTSRCEGLHSELAKFVHSRYNLTDFLHHFHHCLEHIRFKEKEDDFASLHGDPVLQTKYPSIEKSVAKYLTKELFMKCRYFINKAADFVVVGCSKTLTVSIFTVCKRGGRGKEWKVTHDAGNNEFKCDCMRMESRGLPCEHLVAVLVHLRINDLPRCFVLKRWSKGAKDGFYDRNRDGDTTWNSSLVFRSDEAMHVCRLIIKLNDTAEEHHEFMEKLLQIYEERKARKSCLNGDGSSSNRFMVENLRDPVCVRTKGRGGGKSTTFGLAVRRRKKCSICKVPGHNKLTCPHSQRQAPLHESEDDDIYFPTQDLDTDMIPGHNQHTCPHSQREAPLHESEDDDIYFPTQDLDTDMILGHNQHTCPHSQREAPLHESEDDDIYFPTQDLDTDMIGSHMSM. 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01129 888 PANTHER OS01G0519700 PROTEIN 108 818 - -
Seca11g01129 888 SMART 26again6 616 643 IPR006564 GO:0008270
Seca11g01129 888 Coils Coil 695 715 - -
Seca11g01129 888 Pfam FAR1 DNA-binding domain 117 208 IPR004330 -
Seca11g01129 888 ProSiteProfiles Zinc finger SWIM-type profile. 605 641 IPR007527 GO:0008270
Seca11g01129 888 Pfam MULE transposase domain 328 422 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01129 Seca-Chr11 11773592 11781494 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g01129 MULE 2.9e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01129 - - tpra:123913749 756.518