Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01116 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCATGGGTCTCAGAAATTGGACATCCACTTCTCAGGAAGAGAAGGGTGTGGCTAGGCACATTTGAAACAGCAGAGGAAGCAGCACGAGCATATGATCAAGCAGCCATTTTGATGAGTGGTCGAAATGCAAAAACCAATTTCCCAATAACCCAAACTCCAGAAGGTGACCCAAAGAGTGAGGAAAGCCCTTCCACCTCAAAGGATCTGGAAGAAATTCTACACGCAAAGCTTAGAAAATGTGGCAAGGTACCTTCCCCTTCCATGACCTGTTTGAGGCTTGACACAGAGAACTCCCACATCGGAGTGTGGCAAAAGCGTGCAGGGAGGAGTTCTGATTCAAATTGGGTGATGACGGTTCAGCTGGGAAACTCAAACAAGAGCACCAATGAGAGTAATAATGCTATGCCTTGTTCATCTGATTTACAGTCTCCATCAACAGGGGAAACAGGACAGGGAGTGGTGAGAGGAGGAGAGATTGATGAAGAGGAGAGAATTGCCCTCCAAATGATAGAGGAACTTCTCAATGACAGGAACTGTCCTAGTCCTAACACTACTTCATTTAACAATATACAACAACCTGAGGATCATGACAGCTTTTTTCTTTAA 654 0.4541 MVQSKKFRGVRQRHWGSWVSEIGHPLLRKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSEESPSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRSSDSNWVMTVQLGNSNKSTNESNNAMPCSSDLQSPSTGETGQGVVRGGEIDEEERIALQMIEELLNDRNCPSPNTTSFNNIQQPEDHDSFFL. 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01116 217 MobiDBLite consensus disorder prediction 139 166 - -
Seca11g01116 217 MobiDBLite consensus disorder prediction 192 217 - -
Seca11g01116 217 Gene3D AP2/ERF domain 5 66 IPR036955 GO:0003700|GO:0006355
Seca11g01116 217 ProSiteProfiles AP2/ERF domain profile. 6 64 IPR001471 GO:0003700|GO:0006355
Seca11g01116 217 FunFam Ethylene-responsive transcription factor 2 5 65 - -
Seca11g01116 217 MobiDBLite consensus disorder prediction 61 75 - -
Seca11g01116 217 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Seca11g01116 217 MobiDBLite consensus disorder prediction 193 211 - -
Seca11g01116 217 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Seca11g01116 217 MobiDBLite consensus disorder prediction 139 169 - -
Seca11g01116 217 CDD AP2 5 66 IPR001471 GO:0003700|GO:0006355
Seca11g01116 217 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Seca11g01116 217 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Seca11g01116 217 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 149 - -
Seca11g01116 217 MobiDBLite consensus disorder prediction 61 83 - -
Seca11g01116 217 SMART rav1_2 6 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01116 Seca-Chr11 11646724 11648424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01116 1 191 AP2-EREBP Transcription Factor Family AT1G15360 62.687 2.35e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g01116 AP2 3.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01116 - - gmx:100787517 318.931