Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01108 ATGAAGATTGTCAGGCATCCTAATATAGTTAGGTTGCATGAGGTTTTGGCCAGTCAGACCAAGATCTACATAATTCTCGAGTTTGTAATGGGAGGGGAGTTATATGATAAAATTGTTCAGCTGGGAAAGCTTTCTGAAAATGAATCTAGGCGCTACTTTCAACAACTTATAGATGCGGTTGCTCATTGTCATAAAAAGGGTGTGTACCATAGAGACTTGAAGCCCGAAAACCTTCTTCTTGATGCTTATGGAAATTTGAAGGTTTCTGACTTTGGATTGAGTGCATTGACTAAGCAGGGTGTTGGCCTTCTTCATACCACATGTGGGACCCCAAATTATGTTGCCCCTGAGGTGCTCAGCAATCAAGGTTATGATGGCGCAGCAGCTGATGTTTGGTCATGTGGAGTCATCCTATATGTTCTAATGGCTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCAACATTGTACCGAAGGATCAATGCTGCAGAATTTGTCTGCCCATTATGGTTTTCTGCTGGTGCAAAGACATTGATACATAAAATTCTGGATCCTAATCCTAAAACACGGGTGAAAATTGAAGCAATAAGGAAAGATCCATGGTTCCAGAGAAACTATTTACCTGTCAAACTCAGGGAAGATGAGCAAGTGAATTTGGATGACGTCCAGGCTGTTTTTAATGATATTGAGGACCAATATGTTGCTGATCGGTCAGAAATTACTGAGGGAGGTCCTTTGGTAATGAATGCATTTGAGATGATTACCTTATCCCAAGGGTTGAATCTTTCACCACTATTTGACAGGCATCAGGATTATGTAAAGCGGCAAACTCGTTTTGTTTCCCGTAAACCAGCAAGAGTTATAATTTCATCCATTGAAGCTGTTGCAGAGTCAATGGGTCTTAAGGTCCATTCTCGCAATTACAAGATGAGGATTGAAGGAGTTTCAGCAAATACAGTTCGACAATTTGCAGTGGTCTTGGAGGTTTATGAAGTTGCACCATCCCTTTTCATGGTAGATGTTCGAAAGGCAGCTGGGGATACTCTTGACTATCACAAGTTCTACAAGAATCTTTGTGCCAAACTAGAAAGCATTATTTGGAAACCGGCAGAGACTATGCCAGATTCTGGTATGCTTCGACAAATGACTTTCTGA 1155 0.4139 MKIVRHPNIVRLHEVLASQTKIYIILEFVMGGELYDKIVQLGKLSENESRRYFQQLIDAVAHCHKKGVYHRDLKPENLLLDAYGNLKVSDFGLSALTKQGVGLLHTTCGTPNYVAPEVLSNQGYDGAAADVWSCGVILYVLMAGYLPFEEADLPTLYRRINAAEFVCPLWFSAGAKTLIHKILDPNPKTRVKIEAIRKDPWFQRNYLPVKLREDEQVNLDDVQAVFNDIEDQYVADRSEITEGGPLVMNAFEMITLSQGLNLSPLFDRHQDYVKRQTRFVSRKPARVIISSIEAVAESMGLKVHSRNYKMRIEGVSANTVRQFAVVLEVYEVAPSLFMVDVRKAAGDTLDYHKFYKNLCAKLESIIWKPAETMPDSGMLRQMTF. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01108 384 CDD CIPK_C 249 359 - -
Seca11g01108 384 Pfam Protein kinase domain 2 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01108 384 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 353 - -
Seca11g01108 384 SUPERFAMILY Protein kinase-like (PK-like) 1 257 IPR011009 -
Seca11g01108 384 ProSiteProfiles NAF domain profile. 243 267 IPR018451 GO:0007165
Seca11g01108 384 Gene3D Kinase associated domain 1, KA1 246 368 - -
Seca11g01108 384 SMART serkin_6 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01108 384 FunFam Non-specific serine/threonine protein kinase 1 242 - -
Seca11g01108 384 Gene3D Transferase(Phosphotransferase) domain 1 1 245 - -
Seca11g01108 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672|GO:0006468
Seca11g01108 384 ProSiteProfiles Protein kinase domain profile. 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01108 384 FunFam Non-specific serine/threonine protein kinase 242 368 - -
Seca11g01108 384 Pfam NAF domain 245 304 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01108 Seca-Chr11 11537827 11547310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01108 1 310 CBL-interacting serine-threonine protein kinases AT5G35410 73.871 1.87e-178 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca11g01108 Pkinase 1.5e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01108 - - tpra:123920042 699.508