Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01100 ATGCAGGTGAGTGTTCCATGCAGTAGCCTTTTTGACATAGTGACCGTTCGATGTGGCCACTGCACCAATCTATGGTCCGTCAACATGGCCGCGGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGAGGTGGTGGGCAGTGCAATAATCCAGAGTATAGGATTGACACTAGTGCTGCAGGCTCCACTTCAAAATGCAACAATAGGATTGCTGCAATGCGTGCACCCACCACTCATCTTGTAACTCAGGAAAGGGTTGTCAACCGCCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCATTCAGTACTGCTGCAAAGAACTGGGCACATTTTCCTCATATTCATTTTGGGCTGATGTTGGAGAGCAACAATCAAGCTAAGATGGACAATGTAAGTATATTAAAGTAA 480 0.4625 MQVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGGGGQCNNPEYRIDTSAAGSTSKCNNRIAAMRAPTTHLVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMDNVSILK. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01100 159 Pfam YABBY protein 2 142 IPR006780 GO:0007275
Seca11g01100 159 FunFam Axial regulator YABBY 87 157 - -
Seca11g01100 159 SUPERFAMILY HMG-box 86 135 IPR036910 -
Seca11g01100 159 PANTHER PROTEIN YABBY 6-RELATED 2 151 IPR006780 GO:0007275
Seca11g01100 159 Gene3D High mobility group box domain 82 137 IPR036910 -
Seca11g01100 159 CDD HMG-box_SF 96 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01100 Seca-Chr11 11470355 11473796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01100 1 152 C2C2-YABBY Transcription Factor Family AT2G26580 71.053 3.07e-73 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca11g01100 YABBY 3.4e-59 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01100 K25796 - gmx:100499942 281.952