Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca11g01100 | ATGCAGGTGAGTGTTCCATGCAGTAGCCTTTTTGACATAGTGACCGTTCGATGTGGCCACTGCACCAATCTATGGTCCGTCAACATGGCCGCGGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGAGGTGGTGGGCAGTGCAATAATCCAGAGTATAGGATTGACACTAGTGCTGCAGGCTCCACTTCAAAATGCAACAATAGGATTGCTGCAATGCGTGCACCCACCACTCATCTTGTAACTCAGGAAAGGGTTGTCAACCGCCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCATTCAGTACTGCTGCAAAGAACTGGGCACATTTTCCTCATATTCATTTTGGGCTGATGTTGGAGAGCAACAATCAAGCTAAGATGGACAATGTAAGTATATTAAAGTAA | 480 | 0.4625 | MQVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGGGGQCNNPEYRIDTSAAGSTSKCNNRIAAMRAPTTHLVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMDNVSILK. | 160 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca11g01100 | 159 | Pfam | YABBY protein | 2 | 142 | IPR006780 | GO:0007275 | |
Seca11g01100 | 159 | FunFam | Axial regulator YABBY | 87 | 157 | - | - | |
Seca11g01100 | 159 | SUPERFAMILY | HMG-box | 86 | 135 | IPR036910 | - | |
Seca11g01100 | 159 | PANTHER | PROTEIN YABBY 6-RELATED | 2 | 151 | IPR006780 | GO:0007275 | |
Seca11g01100 | 159 | Gene3D | High mobility group box domain | 82 | 137 | IPR036910 | - | |
Seca11g01100 | 159 | CDD | HMG-box_SF | 96 | 132 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca11g01100 | Seca-Chr11 | 11470355 | 11473796 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca11g01100 | 1 | 152 | C2C2-YABBY Transcription Factor Family | AT2G26580 | 71.053 | 3.07e-73 | 215 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-YABBY | Seca11g01100 | YABBY | 3.4e-59 | CL0114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca11g01100 | K25796 | - | gmx:100499942 | 281.952 |