Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01086 ATGGAGCTTCAGTTGGGTCTCGCTCTCCCAACCAATCCCCCTAAACTTGTCGATCTCAATTCTCGTGCCAATGAGCCTAATTTCAATCACAACAAACGCAGTTTCTCTCAACTATTCGATCAAAGCACCAACCACGCACTGCTTCCTACTCTGCCTCTTCTCACCTTAACGCCAGCTGCCCAACCAAACCACGATGAACAACACTCCACCACCCACTGCTCTACTATCACCAACAAGAACGATGAAGATGCTCTGGTGGGATGGCCACCCGTAAATTATAGGAGGAAGAAAATTCGTTCCAATAACTATGGGGATCGTGATGATGATGCAGGGAATGATCATATGATGGTATGGATTGATCATCATCATGACCATGGCTGTGGTAATCTCAAAGGATCGAATACCCTGTACGTGAAGGTGAAGATGGAGGGTGTAGGAATCGCTAGAAAAGTTAATCTCAGCATGCACCATTCATTTCAGACGCTCAAGGATACCTTGATGGACATGTTTGGAAAATGTAATCAACAGGACTCAAGCAGCTATGAACTGGCTTATCAGGACAACGAAGGTGATTGGCTTGTTGCTGAAGATGTGCCATGGAGGAGTTTCATTCAGTGTGCACAGCGGCTCAAGTTGCTAAAGAGCAGAGGATAA 654 0.4587 MELQLGLALPTNPPKLVDLNSRANEPNFNHNKRSFSQLFDQSTNHALLPTLPLLTLTPAAQPNHDEQHSTTHCSTITNKNDEDALVGWPPVNYRRKKIRSNNYGDRDDDAGNDHMMVWIDHHHDHGCGNLKGSNTLYVKVKMEGVGIARKVNLSMHHSFQTLKDTLMDMFGKCNQQDSSSYELAYQDNEGDWLVAEDVPWRSFIQCAQRLKLLKSRG. 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01086 217 SUPERFAMILY CAD & PB1 domains 129 212 - -
Seca11g01086 217 ProSiteProfiles PB1 domain profile. 135 217 IPR000270 GO:0005515
Seca11g01086 217 Pfam AUX/IAA family 29 172 IPR033389 -
Seca11g01086 217 Pfam AUX/IAA family 177 215 IPR033389 -
Seca11g01086 217 Gene3D - 130 217 - -
Seca11g01086 217 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 215 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01086 Seca-Chr11 11267489 11268612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01086 137 215 B3 DNA Binding Superfamily AT1G19220 32.927 2.46e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Seca11g01086 AUX_IAA 6e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01086 K14484 - gmx:100808466 213.001