Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01063 ATGTATGCAAAGAGACCCAAATCAGCACCACTAACAGCTCCCAGCTTATTCCACGCCACAAAACCACGTTGTTGTGGGAAATTTCTTTACTTGTCCTCTTTTGTAGAACATCAAACACCACCTTTCTTTTTTCGTCTCCCCTCTCTGACTCTGACTGTTTGGTATGGTATCTGCCATGTCTATTCGCCCCATCGTCATCTTCAAACTGTCCACCCCACGTGCTTGAAACTGCACAGATACTCACCTCTGTCACTAAACCACTGGGTTGCTGCCATGTCCACTAACCACTTATCAAATGGCGACTCCGAGTCCCTCCTTCGCCGACCCTTGCTCTCTTCTCAAAGATCCATTGTTAACTCCACTTCCCAGGTTGCCATCGTTGGTGCCAATGTCTGCCCTATCGAGAGCCTCGACTATGAGATCTTTGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGGTTGGTTCAGATATTTCAGTACATATTTATGAAATGGCTCTTGTGCTTTTTAATTGGTATGATCCTTGGCCTTGTCGGGTTCTGCAACAATCTCGCTGTTGAGAATCTCGCTGGTATGAAGTTTGTGATCACATCCAATATGATGTTGGAGGGGAGGTACTACAGGTTTCTGTTGGCATTTGTAACATTTTTTGCTTCAAATTTGTGTCTCACGCTTTTTGCCTCTATAATAACGGCTTTGATAGCACCTACTGCAGCCGGTTCAGGTATACCAGAGGTGAAGGCTTACCTAAATGGTGTAGATGCACCTGGAATATTCACTGTACGAACTCTATTCGTTAAGATTATTGGAAGCATTACGGCAGTGTCATCATCTCTTCTTATTGGGAAGGCAGGGCCTATGGTGCATACAGGTGCATGTGTGGCGGCGTTGTTGGGTCAGGGTGGGTCAAAGAGACATGGGTTTACATGGAAATGGTTACGGTTTTTTAAGAATGACCGAGATCGACGAGATATAATAACATGTGGATCAGCAGCTGGAATGGCTGCTGCCTTCCGTGCGCCTGTTGGTGGGCAATGTCTCAAAATTAAATTCATTCATGTTAAATTTCTGTTCTACAGGTGGAGAACCGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCGATTTTTCTTCGTGCTATGATTGATATATGTCTAAGTGGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATACAGCAAGTATTTCATATCATTCGGCGGACATTCCTCTTGTGTTTTTTCTTGGTGTTATAGGGGGGATACTTGGAAGCATATATAATTATATGTTGAACAAAGTTCTTCGCATATACAATGTTATCAATGAGAAAGGAACCATTTGCAAAATTTTGCTTGCTTGTTTAATCTCCATTTTTACATCATGTCTTCTTTTTGGATTGCCATGGCTTGCATCTTGCCGACCTTGTCCACCTGATGCAGTTGAGCCTTGTCCCACAATAGGTCGGTCTGGTATCTACAAGAAATTCCAATGCCCTCCTAATCACTATAATGATCTTGCCAGCCTTATTTTTAACACAAACGATGATGCTATCAGAAATCTATTTAGCAGGAACACTGCAAGTGAGTTTGAGTTTTCATCAACATTCATCTTCTTCATCACATGCTTTTTCTTAAGTATCTTTAGCTGTGGAGTTGTTGTTCCTGCTGGTCTTTTTGTGCCAATTATTGTGACTGGTGCATCTTATGGACGCATTGTTGGAATGTTAGTTGGTAAAAATTCCAATCTTAACCATGGCCTATATGCTGTACTTGGCGCTGCTTCCTTTCTTGGTGGATCTATGAGGTCAACAGTTTCTCTGTGTGTAATTATGCTAGAACTGACCAATAACCTGTTATTGCTACCCCTAATCATGATGGTGCTGTTGGTATCCAAGACTGTAGCTGATGTTTTCAATGCAAATATATATGACCTTATAATGAAAGCCAAGGGTTTCCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTAACAGTAGCTGATGTAGTCACAGGCCCACTTCAGATGTTTAATGCCATTGAGAAGGTTCGTAACATAGTGTTTGTCCTCAAAACTACAAGACATAATGGGTTTCCTGTTATTGATGAGCCTCCACTTTCTGAAGCTCCAGTTTTATTTGGTATAATCCTTCGTGCCCATCTTATTGCATTGTTAAAGAAGAGAGCTTTCTTGTCTGTGCCTATGACAATGAGGGATCATGTCTTGAAACAGTTTTCAGCAGATGATTTTGCAAAGAACGGTTCAAGCAAAGGTGAAGATATTGAGGATATACAGTTAACGGAAGAAGAGATGGACATGTTCATTGATCTACATCCTTTTACTAATGCTTCGCCTTATACTGTCGTGGAAACAATGTCACTGGGGAAGGCCCTTACACTCTTCCGAGAGGTTGGTTTAAGGCACATGCTAGTGATACCCAAGATACCCAGTAGATCACCAGTAGTGGGTATACTGACACGGCATGATTTCACACCAGAACATATATTGGGTATGCACCCTTTTCTGGTAAGAAGCAGATGGAAAAGATTAAGATTTTGGCAACCCTTTCTAGAAAAAATTTTCTTGGACGTCTAA 2628 0.4189 MYAKRPKSAPLTAPSLFHATKPRCCGKFLYLSSFVEHQTPPFFFRLPSLTLTVWYGICHVYSPHRHLQTVHPTCLKLHRYSPLSLNHWVAAMSTNHLSNGDSESLLRRPLLSSQRSIVNSTSQVAIVGANVCPIESLDYEIFENEFFKQDWRSRGLVQIFQYIFMKWLLCFLIGMILGLVGFCNNLAVENLAGMKFVITSNMMLEGRYYRFLLAFVTFFASNLCLTLFASIITALIAPTAAGSGIPEVKAYLNGVDAPGIFTVRTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSKRHGFTWKWLRFFKNDRDRRDIITCGSAAGMAAAFRAPVGGQCLKIKFIHVKFLFYRWRTALLWRAFFTAAIVAIFLRAMIDICLSGKCGLFGKGGLIMFDAYTASISYHSADIPLVFFLGVIGGILGSIYNYMLNKVLRIYNVINEKGTICKILLACLISIFTSCLLFGLPWLASCRPCPPDAVEPCPTIGRSGIYKKFQCPPNHYNDLASLIFNTNDDAIRNLFSRNTASEFEFSSTFIFFITCFFLSIFSCGVVVPAGLFVPIIVTGASYGRIVGMLVGKNSNLNHGLYAVLGAASFLGGSMRSTVSLCVIMLELTNNLLLLPLIMMVLLVSKTVADVFNANIYDLIMKAKGFPYLETHAEPYMRQLTVADVVTGPLQMFNAIEKVRNIVFVLKTTRHNGFPVIDEPPLSEAPVLFGIILRAHLIALLKKRAFLSVPMTMRDHVLKQFSADDFAKNGSSKGEDIEDIQLTEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFREVGLRHMLVIPKIPSRSPVVGILTRHDFTPEHILGMHPFLVRSRWKRLRFWQPFLEKIFLDV. 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01063 875 PRINTS Plant CLC chloride channel signature 515 531 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca11g01063 875 PRINTS Plant CLC chloride channel signature 373 383 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca11g01063 875 PRINTS Plant CLC chloride channel signature 140 148 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca11g01063 875 PRINTS Plant CLC chloride channel signature 391 398 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca11g01063 875 SUPERFAMILY Clc chloride channel 144 666 IPR014743 -
Seca11g01063 875 CDD CBS_pair_voltage-gated_CLC_euk_bac 676 844 - -
Seca11g01063 875 ProSiteProfiles CBS domain profile. 791 852 IPR000644 -
Seca11g01063 875 Pfam Voltage gated chloride channel 226 645 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g01063 875 SMART cbs_1 795 846 IPR000644 -
Seca11g01063 875 SMART cbs_1 684 737 IPR000644 -
Seca11g01063 875 Gene3D - 666 842 IPR046342 -
Seca11g01063 875 SUPERFAMILY CBS-domain pair 667 841 IPR046342 -
Seca11g01063 875 Gene3D Clc chloride channel 158 665 - -
Seca11g01063 875 PRINTS Chloride channel signature 563 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g01063 875 PRINTS Chloride channel signature 238 255 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g01063 875 PRINTS Chloride channel signature 651 665 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g01063 875 PRINTS Chloride channel signature 269 288 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g01063 875 PRINTS Chloride channel signature 613 632 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g01063 875 PRINTS Chloride channel signature 333 352 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g01063 875 PRINTS Chloride channel signature 595 611 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g01063 875 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 112 848 - -
Seca11g01063 875 FunFam Chloride channel ClC3 158 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01063 Seca-Chr11 10886704 10893023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01063 97 869 Ion Channels AT5G33280 71.539 0.0 1112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01063 K05016 - gmx:100817901 1214.52