Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01033 ATGGGGAAGAAAAAGAAGCAAGCAGGAGAAACAAATGAAGATAGAGGAAATCAAAACAAAGTGGGAAATAGCAGCCCCAGAGCATATGACAATGACACTATGGTATTTATATCCATGTCTCAAGAGTTGAAGGATGAAGGGAACAAGTTGTTCCAAAAGAGGGACCTTGAAGGAGCTTTACTAAAATATGAGAAAGCCCTCAAATTGCTTCCAAGAAATCATATTGATGTGTCCTATCTGCGGAGTAATATGGCTTCATGTTACATGCAGATGGGACTCAGTGAGTATCCAAGGGCAATTCATGAATGCAATTTGGCCCTCGAAGTGACACCAAAATATAGCAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTCTGAGAGATGTTAGCACTGTTGTGAAGATAGAGCCAAATAATGTCATGGCATTGGAGATCTCAGAAAATGTGAAAAATGCACTTGAGGAGAAAGGATTGAGAGTCAATGATACAATAATTGAGTTACCTCCAGATTATGTTGAACCACCTAATGCTTTACCTCCAGAAAAGGTAGTGAAAGAGAAGACACACAAGAAGAAGAGCAATAAAGTGGAAGAGAAGCCTCCTGATAACAAAATCTAG 642 0.3988 MGKKKKQAGETNEDRGNQNKVGNSSPRAYDNDTMVFISMSQELKDEGNKLFQKRDLEGALLKYEKALKLLPRNHIDVSYLRSNMASCYMQMGLSEYPRAIHECNLALEVTPKYSKALLKRARCYEALNRLDLALRDVSTVVKIEPNNVMALEISENVKNALEEKGLRVNDTIIELPPDYVEPPNALPPEKVVKEKTHKKKSNKVEEKPPDNKI. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01033 213 MobiDBLite consensus disorder prediction 188 213 - -
Seca11g01033 213 Gene3D Tetratricopeptide repeat domain 38 169 IPR011990 GO:0005515
Seca11g01033 213 SUPERFAMILY TPR-like 40 153 IPR011990 GO:0005515
Seca11g01033 213 PANTHER PROTEIN CLMP1 3 203 IPR044517 -
Seca11g01033 213 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Seca11g01033 213 MobiDBLite consensus disorder prediction 1 29 - -
Seca11g01033 213 MobiDBLite consensus disorder prediction 177 213 - -
Seca11g01033 213 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Seca11g01033 213 SMART tpr_5 78 113 IPR019734 GO:0005515
Seca11g01033 213 SMART tpr_5 40 73 IPR019734 GO:0005515
Seca11g01033 213 SMART tpr_5 114 147 IPR019734 GO:0005515
Seca11g01033 213 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01033 Seca-Chr11 10581474 10582115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01033 28 147 Calmodulin-binding Proteins AT3G25230 30.303 2.00e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01033 K26538 - gmx:100807387 338.576