Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01009 ATGGGTTCCTCCTCTAGTCGACTTGCCTCTGCCTCTCGCTCTCGCCCTTCTACTTCCAGTCCCAACACCAGCAGGGTCAACCGATTCAGACTATCCTCCCTTCTTTGTGGCACCTCCACCTCTCGCTCGGTTTATCAGATGGAAGAACGTCCATCTGAGATTCAGGTTGATTCGGCAAGAGACTTCGATGGTGAAATTCAGAAAGTCACAGAGGAATCGTCTTTATCATGTACTGAAGCCAGAATTAACTGCTGTCCCCATACTGAAACTGCAACCTCGTCTGATATGAGATCTGAATTCTGTGGGAATACTACTGTTGAAGGTTCTTCCAGAAATGTTGCAACAAGTAGTCAGAGGAAGTGCTTGTCTGAACGTAAGGAGCTAGTCCCTCCTTATCAGGTAAGTGCTGGACACAGTCATCATGAATCATATAGTGATAGTAGCAATACAGCTAGTACTTCATTTGTTGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGCAGTCAATACTGTTGATGATCCAGTGGTTAGTGGTGTCCCTCAAATCTCTTGTGAGACAATGCATCCAAGGAGTTCAACCCCTCAAGAGCATGGAAATTCCAGTCCTGGTGAAATTTCTGTTGAGAATCACACTGGTCCATTCATATCTATCCAAAGTTCTTCTCCCAATCCTGTTCCTCAAGAGTCCCATATACCAACAACTTCTCCAGTGCCAGAAAATGAACCTCATCGCGAGACAATACCTTCAGGTTTAGGTATTATTGTGTCCAATCGGGAAAGAGGACAGGGAAATGATGGTGTGCTTCAACTTGATGTGGTCACAATATCTTCCAACATTTTGTCTGGCAGCAATGCAGATGCCAATGATCATGATGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATAGTCTTCTCCACTGGAGGTGCTGATGATCCAGGATCTCAAGATCGATGGCTTGTTGATTTTGGTAGTGATTTATCTAATGATGGGATTGGGGGTGCTTCTGGATATACGGGAAGTAGAATTCACAGATTGAATGATCGAATGCGACACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTGGCCTTGACGAGATTGGTCGGTGGAATTCTTCATGTCCATTAGGACTCCATGCAGATGGTATGTGCTCATGCGAGTCTTTCCCAATGCCTGAGGAATCTAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTCTGTTTGAGTTGTTCAGATCGAACTATGATATCACTGACAGGGAAGTGTGCTTACTGGATAAGAGCATTTCAAGTGCAGATGCTCTGATCTGCATTTGTTTTTCTTCTTTTTGGCCTCTTTTCTACAAAGCCAGGGAAAAACAATTCTTGTTCCTTATGCTTCACTGGGTGTATCATGATACTTACAGACTCACCCCAGTTTTAGATGAAATCCACCGGCAACCTGTATCACTTTCACTATCCATGGTCTCACTCCCTGCACCAGAATCAATTGTTGACTCCTTCCCTCTGAAGTCTCACAAAAAGGTTGATGCAGCTGATGGAGGCAATGATGCTGAACAGTGTTACATATGCCTGGCGGAGTATGAAGAAGGGGACCAGATACGGGTTCTTCCTTGCAACCATGAGTATCACATGTCGTGTGTGGATAAGTGGCTAAAGGAAATACACGGCGTTTGTCCTCTATGTCGTGGCAATGTTTGTGGAGGGTTCACTGAATCTTCTTCACACTCAGAAGTGCAGTCTCATCATTGA 1833 0.4468 MGSSSSRLASASRSRPSTSSPNTSRVNRFRLSSLLCGTSTSRSVYQMEERPSEIQVDSARDFDGEIQKVTEESSLSCTEARINCCPHTETATSSDMRSEFCGNTTVEGSSRNVATSSQRKCLSERKELVPPYQVSAGHSHHESYSDSSNTASTSFVEQQSSDPVSVNVSANKDAVNTVDDPVVSGVPQISCETMHPRSSTPQEHGNSSPGEISVENHTGPFISIQSSSPNPVPQESHIPTTSPVPENEPHRETIPSGLGIIVSNRERGQGNDGVLQLDVVTISSNILSGSNADANDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGSDLSNDGIGGASGYTGSRIHRLNDRMRHSRSEIWERLRGGLDEIGRWNSSCPLGLHADGMCSCESFPMPEESSTRASISRIVMLAEALFELFRSNYDITDREVCLLDKSISSADALICICFSSFWPLFYKAREKQFLFLMLHWVYHDTYRLTPVLDEIHRQPVSLSLSMVSLPAPESIVDSFPLKSHKKVDAADGGNDAEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSSHSEVQSHH. 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01009 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 594 IPR013083 -
Seca11g01009 610 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 608 - -
Seca11g01009 610 MobiDBLite consensus disorder prediction 1 26 - -
Seca11g01009 610 FunFam Putative RING zinc finger domain superfamily protein 515 595 - -
Seca11g01009 610 SUPERFAMILY RING/U-box 535 593 - -
Seca11g01009 610 MobiDBLite consensus disorder prediction 191 247 - -
Seca11g01009 610 Pfam Ring finger domain 547 590 IPR001841 -
Seca11g01009 610 MobiDBLite consensus disorder prediction 138 165 - -
Seca11g01009 610 MobiDBLite consensus disorder prediction 132 165 - -
Seca11g01009 610 ProSiteProfiles Zinc finger RING-type profile. 548 590 IPR001841 -
Seca11g01009 610 SMART ring_2 548 589 IPR001841 -
Seca11g01009 610 MobiDBLite consensus disorder prediction 191 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01009 Seca-Chr11 10355297 10360110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01009 497 594 C3H Transcription Factor Family AT5G45290 56.190 1.12e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01009 - - gmx:100783604 663.299