Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01004 ATGGCATTTGATCAGAATTCCGTTCCTATTGATCTACGCGCATTGAACGTGGTTCCAACGATGGCGGAGGAGCTGCATGTGTCGCCGGCCAGCACCACGCCCCCGACTCCCAATTCAGCTCGCGACCTTTTCTACACGCCGTCGGCCTCCGCCACCACCGCCACCTGGTGCGTTCGCCCCATGGCGCATCCTGCTGCTATCGGGTTTAACTATGGTTGTGGTTTTGGCAATCGGGTTGCACCTGGTAATGCTTTGAATTTGGGCAATTGGGTTGGGGCTAATGGTTTGGACAAGGCCTGCAATGATAGTGTAGCTGTAAATGGTTATGCTTATGGTGGTGCTGTTGGGGGCACCAGACTGTGTGATGAGGCCGGGGATGATTCGGTGTCAGGGAGAAAAGTGAAGTTTTTGTGCAGTTTTGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGAATGTTGAGATATGTTGGAGGGCAGACAAGGATCATTAGTGTTAGGAGGGATGTTAGTTTCAATGATTTGGTGCAAAAGATGGCTGAGACTTATGGGCAGCCAGTGGTTATCAAGTATCAACTCCCTGAGGAGGATCTTGATGCGCTTGTCTCTGTTTCATGCCCTGATGATGTTGAAAATATGATGGAGGAGTATGAAAAATTAGTTGAGAAGTCTCCTGATGGTTCTGCTAAGTTAAGGGTTTTTCTGTTTTCTGCCTCTGAGCTTGAACTTTCTGCTGGTGCGGTGCAATTTGGGGACTTGCAAGATACTGGCCAGAAATATTTTGATGCTGTGAATGGACTTTCGGATGGGAATGGAATTAGTGGTGGAATCAAGAGGAAGGGGAGTGTTACAAGTGCAGCTTCAACTCAGAATTCTGATTTGAGTGGGATAGATACTTTTGATCATTCAATTGCTGGTCAAGGGGAGCCAATGGCATCACCCAAGGAGAATGTGGCAGCTTCTCCAGACATAAGTGCAAATTTGGTGATGTCAGAACCCAGTACAGCAGGTACTTCTGCGGTTTCATTGGGCATGCCTGTGGCTAAGACTAGTCCAACACACACTCCATATTTCCAGAATGAGGTTGAGTTAGAAAAGTCTGTGCCTGTTACTTTATCCCAGCAGCCATTTGGATTGCAGCAATCTGGAATGGAAGTTTCACCCCATTCACCTTATTTGCAGCCTTTTGTTGATACACGCCAGGAGGTTATGAACCATGCAGATTATGTCCACCTGCCTCCCCAAATGGGGTTCCCAAATCCTCATCTTTTAGGGAAGACAGGGCATGTCTTCACACAACAGCAGTTTCATGATAATACTCCTACTAGTTTAGCATTCCATCAGGTCAACCCTGGAGCACAAATGACAATGACTCCACCATCTTCTCATGTTGGTGTAAGACCAACTGTTATTCAGCAACAACCATTGATGCAACAGCAGCAAAATCGTTTGGATCAATACAGTGATGAAAATACATCAGGGATAAGGATTATCCAGCTTCCTGCTGAACAAAGCTACAATACATATCAGGTTCCAGTGAATCAAGTCCCATCTGTCATAGTTGGAGGTAATTATGGTTGGGTTCAGGTTCCTTCACAAGAGCCTGTTGTTTTCTCTGATGGATTATTACCTCAACAACAGGTAATGATCCCTGAGAGAATCCAAAGAGCTGAGGGCTGTACTATGTGTCAGACAAAGTTACCTCATGCCCATTCCGATCCTGTGGTTCCCGATCAGCATAGTAGTGGTGCAGGTCCAGCTCCTGATTCAGGCCCAAGTTACCATAGTTTGCCTATGGAGGACATTGTAAAAGCTCAAGCAAAAAATAGGGCCAAGCCTATGGTGACAGCACCCTTGAAGGAAGGCATTATTGAACAAGGTGCTGGGACCAGACACAGGGTCATTAACAAATTTGAACCTCCTGATGGAGTACCTTATACTGATAATACTGGGCTTTCTCATAATCTTGAGCCTCAGCCTGAAGGTGGGAGGATTTTTATGCAAAAGCCAGAAGAATTTGATCATACCAGAAATTCATTTATCCAGGAAACAATTGGAAGGACAGGTGGAAAACAGTCTCCCAATGATGGGCTCAAGGCCATGGGAACATCACCACTGTCTTATCCAGATGATGGTATCCACCAGCATATGGTGCCAGGTGAAAACTGGGTTAAACAGGAGGTGCTTGTCAATAAACCTGTCAATAATGATATACCTACAGTTGAGGGAACCACTATACAAACTTCAGAGTGTATGGTTCAAGGATCTCCAAACGAATATACTAATGAGCTTATTGGTGCTGTTTCTAAATCAAATGAAGTGGATAATTGGATTAGACAGGGCCATCTAAAACCTTTTGATGGAAGGATGGACACCTTCAAGATACAAAATCCTGAAATTTATGCAAGCAATGCTCACTGTTTACTGCCAATTGATAAACACAATGGGAATGATAAATTAGATTACAAAAGTCAGCTTCCTCTAGATGAAGAGGTGATTCTGGATAACAACTTTGGCAAGTCAAAATTGATAGTTGATGCAAATCAAATTAAGATGACAGGTGTGGTGCCAAGTTCTTCTACAGAAATTTCATATGGGCACAATTATAGTTCAGGAGAATACAATGAGGTTGCACAATCCCCTATGCTGGACATTCCTTGCTCAAATCCTCAAACAAAGACTGGAAACCACCACAAGGATGATGCAGCATCATCTTTATCTTCACCATCTGTCAGGTTTGGAGATGTGCAGGATTCTCCAAATTCACTTTTCAGCAATCAGGATATCTGGAATATACAACATGGTACCTTCTTTCCTCCGGCTAGACCTAGCAATGCTGCATTGAAGAAAGAAACCTATTCTCATATGGATTACTTTGGTGAGAATCCAGGCAACTGCGGGAAAAAAAATTTAGAAGCACAATTGGATGATGGCCTCTACCAGTCATTCAAACAGAATTTAACTTTTGAACAAGGTCGGTCTGGCAAAGAAGACCAACAACTTCAAGCTGTTGCTGAAGATGTAGCAGCTTCTGTTCTGCACCCATGTACTCCTCCAAATCCTAACTTGCATGCCAGAGATGTTTCCTGTCGTGAAAACATTGAGGATGACGATGTTCAAAATAATCTAATAGATGTAATGTGTAGAGATAAATCTCTGGATGTCAAGAGCAAGCCACCAGAAAAGGCAAATTTTGGCTTTCCGGCAGCAGTTGGTGTTGGACGATTGCAGGTTATAAAGAACTGTGACCTTGAAGAGCTGTCAGAATTGGGTTCTGGTACTTTTGGGACTGTTTATCATGGAAAATGGAAGGGATCTGATGTTGCAATCAAGCGAATTACTGATAGGTGTTTTTCTGGAAAGCCTTCAGAGAAAGAACGCATGAGAGAGGATTTCTGGAATGAGGCAATCAAGCTTGCTGACTTGCACCATCCAAATGTGGTAGCTTTCTATGGTGTTGTGCTTGATGGGCCAGGAGGTTCTGTGGCAACAGTAACTGAGTATATGGCTAATGGTTCTCTAAGAAATGCCTTGCAGAGGAATGAAAGGAGTCTTGACATGCGCAAGCGTCTTTTGATTGCAATGGATGTTGCCTTTGGTATGGAGTACCTGCATGGAAAAAACATAGTACACTTTGACTTGAAAAGTGACAACTTACTTGTGAATCTCCGAGATCCATACCGCCCAATATGCAAGGTTGGTGACTTGGGTCTGTCCAAAGTAAAGTGTCAGACACTTATCTCTGGCGGCGTGAGAGGAACTCTACCATGGATGGCCCCAGAACTGCTGAACGGAAGCAGCAGCCTTGTTTCAGAGAAGGTTGATGTGTTTTCATTCGGAATTGTGATGTGGGAACTCTTAACTGGAGAAGAGCCATACGCTGATTTGCACTATGGTGCTATTATAGGTGGTATTGTGAGCAACACTTTGCGCCCAGGGGTTCCTGATTCTTGTGATCTAGAATGGAAATTGCTGATGGAGAAGTGCTGGTCCTCAGAGCCATCAGAGAGACCTTCCTTCACTGAGATTGCCAATGAATTACGTTCTATGGCAGCCAAACGACAAAATCAACAGCTGCATCCCTCTTCCCCGCACACCCACCTCCACAAATAA 4110 0.4431 MAFDQNSVPIDLRALNVVPTMAEELHVSPASTTPPTPNSARDLFYTPSASATTATWCVRPMAHPAAIGFNYGCGFGNRVAPGNALNLGNWVGANGLDKACNDSVAVNGYAYGGAVGGTRLCDEAGDDSVSGRKVKFLCSFGGKILPRPSDGMLRYVGGQTRIISVRRDVSFNDLVQKMAETYGQPVVIKYQLPEEDLDALVSVSCPDDVENMMEEYEKLVEKSPDGSAKLRVFLFSASELELSAGAVQFGDLQDTGQKYFDAVNGLSDGNGISGGIKRKGSVTSAASTQNSDLSGIDTFDHSIAGQGEPMASPKENVAASPDISANLVMSEPSTAGTSAVSLGMPVAKTSPTHTPYFQNEVELEKSVPVTLSQQPFGLQQSGMEVSPHSPYLQPFVDTRQEVMNHADYVHLPPQMGFPNPHLLGKTGHVFTQQQFHDNTPTSLAFHQVNPGAQMTMTPPSSHVGVRPTVIQQQPLMQQQQNRLDQYSDENTSGIRIIQLPAEQSYNTYQVPVNQVPSVIVGGNYGWVQVPSQEPVVFSDGLLPQQQVMIPERIQRAEGCTMCQTKLPHAHSDPVVPDQHSSGAGPAPDSGPSYHSLPMEDIVKAQAKNRAKPMVTAPLKEGIIEQGAGTRHRVINKFEPPDGVPYTDNTGLSHNLEPQPEGGRIFMQKPEEFDHTRNSFIQETIGRTGGKQSPNDGLKAMGTSPLSYPDDGIHQHMVPGENWVKQEVLVNKPVNNDIPTVEGTTIQTSECMVQGSPNEYTNELIGAVSKSNEVDNWIRQGHLKPFDGRMDTFKIQNPEIYASNAHCLLPIDKHNGNDKLDYKSQLPLDEEVILDNNFGKSKLIVDANQIKMTGVVPSSSTEISYGHNYSSGEYNEVAQSPMLDIPCSNPQTKTGNHHKDDAASSLSSPSVRFGDVQDSPNSLFSNQDIWNIQHGTFFPPARPSNAALKKETYSHMDYFGENPGNCGKKNLEAQLDDGLYQSFKQNLTFEQGRSGKEDQQLQAVAEDVAASVLHPCTPPNPNLHARDVSCRENIEDDDVQNNLIDVMCRDKSLDVKSKPPEKANFGFPAAVGVGRLQVIKNCDLEELSELGSGTFGTVYHGKWKGSDVAIKRITDRCFSGKPSEKERMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMANGSLRNALQRNERSLDMRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPYRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVSNTLRPGVPDSCDLEWKLLMEKCWSSEPSERPSFTEIANELRSMAAKRQNQQLHPSSPHTHLHK. 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01004 1369 CDD PB1_UP2 137 235 - -
Seca11g01004 1369 SMART serkin_6 1083 1349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01004 1369 Pfam Protein tyrosine and serine/threonine kinase 1085 1346 IPR001245 GO:0004672|GO:0006468
Seca11g01004 1369 Gene3D Transferase(Phosphotransferase) domain 1 1170 1368 - -
Seca11g01004 1369 MobiDBLite consensus disorder prediction 887 909 - -
Seca11g01004 1369 Gene3D Phosphorylase Kinase; domain 1 1076 1169 - -
Seca11g01004 1369 MobiDBLite consensus disorder prediction 568 595 - -
Seca11g01004 1369 Pfam PB1 domain 153 236 IPR000270 GO:0005515
Seca11g01004 1369 CDD STKc_MAP3K-like 1089 1346 - -
Seca11g01004 1369 SMART PB1_new 148 237 IPR000270 GO:0005515
Seca11g01004 1369 PANTHER SERINE-THREONINE PROTEIN KINASE 191 1348 - -
Seca11g01004 1369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1208 1220 IPR008271 GO:0004672|GO:0006468
Seca11g01004 1369 PRINTS Tyrosine kinase catalytic domain signature 1317 1339 IPR001245 GO:0004672|GO:0006468
Seca11g01004 1369 PRINTS Tyrosine kinase catalytic domain signature 1273 1295 IPR001245 GO:0004672|GO:0006468
Seca11g01004 1369 PRINTS Tyrosine kinase catalytic domain signature 1165 1178 IPR001245 GO:0004672|GO:0006468
Seca11g01004 1369 PRINTS Tyrosine kinase catalytic domain signature 1202 1220 IPR001245 GO:0004672|GO:0006468
Seca11g01004 1369 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1076 1170 - -
Seca11g01004 1369 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 153 237 - -
Seca11g01004 1369 ProSitePatterns Protein kinases ATP-binding region signature. 1089 1110 IPR017441 GO:0005524
Seca11g01004 1369 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1171 1361 - -
Seca11g01004 1369 ProSiteProfiles Protein kinase domain profile. 1083 1362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01004 1369 MobiDBLite consensus disorder prediction 287 317 - -
Seca11g01004 1369 SUPERFAMILY CAD & PB1 domains 149 239 - -
Seca11g01004 1369 MobiDBLite consensus disorder prediction 1350 1369 - -
Seca11g01004 1369 Gene3D - 154 237 - -
Seca11g01004 1369 SUPERFAMILY Protein kinase-like (PK-like) 1076 1345 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01004 Seca-Chr11 10292346 10298319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01004 133 609 MAP Kinase Kinase Kinase AT3G46920 41.667 1.96e-90 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca11g01004 PK_Tyr_Ser-Thr 6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01004 - - mtr:11439273 1864.74