Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01002 ATGGCTTTTCAAGACCATTTCCAAAACGAAATATCTTTCCAGCGTTTCACAGAGGAGCAGCAAGACATGCAACAACAGAGGCTGCCACCACCAACATGGCTCAACAACGCCACCAATCATCAACGACATCAGCAGAATTTCCTTCACTTGCAAGCGGAGACAACAACAGAGAAAAGCAATTGTGAATCGGATGAGTTAAGGGAATACAAAGGTGACATTTTGGGACACCCCCTTTATGATCAGCTCTTATCAGCTCATGTTTCGTGCTTGAGGATTGCAACCCCAGTGGACCAGCTTCCTAGAATCGATGCTCAGCTTCAACAGTCACAGCGTGTGGTGGAAAAGTACTCTCACTCTTCCTCCTCACTTGGAAATAATAATAATAATAGGGTGGTGGTAGATGAGAAGGAGCTTGATCAGTTTATGACGCATTATGTTCTGTTGCTCTGTGCCTTCAAAGAGCAATTGCAGCAACATGTCCGTGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGATCTCGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCAGGCGAAGGAACAGGTGCAACAACGTCTGACGATGAAGATGAGCAAGCAGAGAGCAATGCCAATTTATACGAAGGAAGTTGCCTGGATGGTGCTGATAGTCTTGGCTTTGGCCCTCTTGTCCCCACTGAGACTGAACGCTCTTTGATGGAACGAGTCAGGCTTGAGTTAAAACAGGAGCTAAAACAGGGTTACAAGAATAAGATTGTGGACATAAGAGAAGAGATTCTACGAAAGAGAAGAGCTGGGAAGCTCCCCGGAGACACCACCTCCCTTTTGAAAGCTTGGTGGCAAGCACATTCTAAATGGCCTTACCCTACTGAGGAAGACAAGGCTAGATTGGTCCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCATCCTCTAGTAACTCCAAAAGCAAGCGCAAGAGCAGTGCAGGCGAAACCAGTAACCAGAGCTTCATGTGA 1050 0.461 MAFQDHFQNEISFQRFTEEQQDMQQQRLPPPTWLNNATNHQRHQQNFLHLQAETTTEKSNCESDELREYKGDILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSHSSSSLGNNNNNRVVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATTSDDEDEQAESNANLYEGSCLDGADSLGFGPLVPTETERSLMERVRLELKQELKQGYKNKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSNSKSKRKSSAGETSNQSFM. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01002 349 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 53 335 - -
Seca11g01002 349 Pfam Homeobox KN domain 281 320 IPR008422 GO:0003677|GO:0006355
Seca11g01002 349 MobiDBLite consensus disorder prediction 182 203 - -
Seca11g01002 349 Pfam KNOX1 domain 69 110 IPR005540 GO:0003677|GO:0005634
Seca11g01002 349 SMART KNOX2_2 128 183 IPR005541 GO:0003677|GO:0005634
Seca11g01002 349 SMART ELK_2 241 262 IPR005539 GO:0003677
Seca11g01002 349 FunFam homeobox protein knotted-1-like 3 isoform X1 262 323 - -
Seca11g01002 349 ProSiteProfiles ELK domain profile. 241 261 IPR005539 GO:0003677
Seca11g01002 349 SMART HOX_1 263 328 IPR001356 GO:0003677
Seca11g01002 349 Gene3D - 267 345 - -
Seca11g01002 349 Pfam KNOX2 domain 132 182 IPR005541 GO:0003677|GO:0005634
Seca11g01002 349 CDD homeodomain 264 325 IPR001356 GO:0003677
Seca11g01002 349 Coils Coil 240 260 - -
Seca11g01002 349 SUPERFAMILY Homeodomain-like 263 328 IPR009057 -
Seca11g01002 349 ProSiteProfiles 'Homeobox' domain profile. 261 324 IPR001356 GO:0003677
Seca11g01002 349 Pfam ELK domain 241 262 IPR005539 GO:0003677
Seca11g01002 349 MobiDBLite consensus disorder prediction 318 349 - -
Seca11g01002 349 SMART KNOX1_2 67 111 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01002 Seca-Chr11 10282742 10289321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01002 57 346 Homeobox Transcription Factor Family AT5G11060 77.241 4.19e-161 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca11g01002 KNOX2 4.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01002 - - gmx:100803673 561.992