Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00992 ATGTGGGGAGGAGTAGTTGTAATAATTGGAAAAGATAGCCCTCAAATCAAATCACAAATCAGGTTGTACTCCTCCATCTTCTGCTGCATAGCTGTTGTAATTTTCATCTCAGGCCTCCTTCAACACTACAATTTTGCCATCATGGGAGAGAGGTTGCTAAAAAGGGTGAGAGAATTTTTGCTAGAAAAGGTGCTAACTTTTGAGGTAGGATGGTTTGACCAAGAGGAGAACACAAGTGCAGCAATTTGTGCACGTTTGGCAACTGAAGCCAACTGGTTAGATCCCTTGTTGCAGAAAGAATTTCATTGTTAG 312 0.4135 MWGGVVVIIGKDSPQIKSQIRLYSSIFCCIAVVIFISGLLQHYNFAIMGERLLKRVREFLLEKVLTFEVGWFDQEENTSAAICARLATEANWLDPLLQKEFHC. 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00992 103 SUPERFAMILY ABC transporter transmembrane region 11 97 IPR036640 GO:0005524|GO:0016020
Seca11g00992 103 Gene3D ABC transporter type 1, transmembrane domain 11 99 IPR036640 GO:0005524|GO:0016020
Seca11g00992 103 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 91 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca11g00992 103 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 24 95 IPR039421 -
Seca11g00992 103 Pfam ABC transporter transmembrane region 15 97 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00992 Seca-Chr11 10181120 10181431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00992 19 91 Calmodulin-binding Proteins AT2G36910 47.945 1.20e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00992 K05658 - gmx:100804664 139.813