Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00987 ATGCCGGACGGAGAATCCTCCACCGCCGGTGCCGGCCAACCGCCCATGCAGTCCTCTTCAAGCGTCTCCGATGATGGACAGTCCCTGAGTCTATCCCAAGTAAAAATTCATGAGGACTCCATCATGAAAGATCCCAAGAAAATTGCAAGAAAGTATCAGTTGGAGCTGTGCAAAAAAGCAATGAAGGAGAATATAATTGTTTATTTGGGGACAGGATGTGGGAAGACCCACATTGCTGTTCTGCTCATGCATGAGATGGGTCATTTGATACGGAAGCCCAAGAAGGATGTATGTGTCTTTCTTGCCCCTACAGTGGCTTTAGTTCATCAGCAAGCAAAGGTTATAGAAGGCTCTACTGATTTTAAGGTTGGGACTTACTGTGGGAGTTCTAAGCGCTTGAAGCGTCACCAAGATTGGGAGCAGGAGATTGGACAGTATGAGGTTCTTGTCATGACCCCGCAAATATTACTTCACAACTTATCTCATTGTTTTATCAAGATGGAGATGATTGCACTTCTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATCCTTATGCAGAAATCATGAAAGTTTTCTACAAAAATAACTCCACAAAGCTTCCCCGTATATTTGGCATGACTGCTTCCCCCGTTGTAGGAAAAGGTTCTTCTAGTGAAGCAAATCTACCAAAAAGCATCAATAGTCTTGAACATATGCTTGATGCTAAGGTATACTCAGTTGAAGACAAGGAACTGCAATCTTTTGTGACCACTCCCGTGATTAATATATATCCTTATGGCTCAACTGCAAATGGGGAAAATAGCTTGAACTCGAAAATTGAGGAGATTAAACGCCAGTGCATAGCAACCCTTAGTAGGAGTATAGAAGATCATCAGAAACGGATGAACACAAAGAAACTTCTGAGCCGGATACATGACAATGTGGTCTTCTGTCTGGGGAATCTTGGCATTTGGGGAGCATTGCAAGCTAGCCGTATTCTTCTAAGCGGTGATCATTCTGAGAGGCATGAACTAGTGGAGGCAGAAGGAAATTCAAGTGATGAGTCTGTGTGTAATAAATATCTTGCTCAGGCAGCTGAACTATTTAATTCACAATGTGACAGTGTATCTGATCCATCTTCTGTGGAAATATTAAAAGAGCCATTTTTCTCAACAAAGCTTTTGCGCCTCATTGGGATACTGTCCAACTTTAGGTTGCAACAAAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATTCATTCTACAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTTTCTAGTAGGAGTCCATTCTGGGCTGAAGAGTATGTCACGAAAGACCATGAACGTCATTGTTGAGAAGTTTCGCTCTGGAGAGCTGAATCTATTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTCATACGATTTGATCTCCCAGAAACTGTTGCTAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGCAATACGAAGGAATTAGACATAATTAATGGTTTTGAGAGAGATGAATCCCGGATGAATATGGAAATTACTGTGCGAACATCCAATGAGACTTACATCACCCCTGAGGAAAGAATATTCAGAGTTGAGTCATCTGGTGCTTCTGTCAGTTCGGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGACGAGTACTTCGACCCCAAGCCAAGTTTTTACTACTTTGATGATTTAGGGGGGATTGTCTGCCACATTACTTTGCCTTCCAATGCTCCAATACACCAAATTGTCAGTACACCACAGCTGTCTATGGAAGCTTCAAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTCTATAAATTAGGTGCTTTAAGTGATTGTCTCTTGCCAGAGCAAGATGCAGAGCCAGAGGAGCAGATTTTGGGTTCTTCAGATTCAGATGAGTGTGAAGAGGCCATTTCAAGAGGAGAATTACATGAGATGCTTGTTCCTTCTGCCTTTGGTCATTCATGGATAAATGAGAAAATTGTCCATCTCAACTCTTACTACATTAAATTTTGTCCCTGTCCAGAGGATAGGGACTACAGAAGGTTTGGTCTATTCATCATGACTCGTCTTCCAATGGAGGCTGAGAAACTGGAACTTGATCTACATCTTGCTCACGGTAGATCTGTGATGACAAAATTTATTCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTTGATAGATTAGAATTTGCTTCTGAGTTTGTAGACTTGGCTAAGGTTGCTGAAACTCACACAAGCACGTCAACCTTCTACCTTTTGCTTCCAGTCATATTGCAAGAATATGATAATATCATGAAAGTAGATTGGAAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGCAGATACTGTGGACAAAAAAGTTTTCCCTTTGGATATTCACCTGCAACTTGCCAATGGTTACAGAAGTGTTAGAGATGTTGAGAATAGTTTAGTGTATGCCCCACATAAGAAGCTCTTTTATTTTGTCACTAATGTTATCTATGAAAAGAATGGATTCAGTTCTTATAAAGATTCAGGCACTTCAAGATATGTGGACCACTTCCTTGAAAAGTTTTCCATTCATCTCAAATGCCCTGAACAACCACTTCTGCATGTAAAACCACTCTTCAATTTGCACAACCTACTACACAACCGGAAGCATGAGGATACAGAACCACATGAGCTGGAGGAATACTTAATTTATTTGCCTCCTGAGCTATGTGAACTGAAAATAGTAGGCTTTTCGAAGGATATTGGTAGTTCCATATCTTTACTACCCTCAGTTATGCATCGTCTTGGAAACTTGCTGATTGCCATTGAACTCAAGCAAATGCTATCTTCTTTCTTCCCAGAGGCAGCTGAAATTAATGCCCTCAAAGTCCTAGAGGCTCTTACCACTGAAAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTTGCTCGTCATTTTTTTCTCATGCATGACAACCTTCATGAAGGCGACCTTACGAGAAGACGTTCCAATGTTGTAAATAATTCCAATTTGTTTAAGTTGGCTATTAGGCGCAAGTTGCAGGTCTATATATGCGATCAGGCATTTGATCCTTTGCAGTTCTATGCATTAGGACGTCCTTGCCCGAGAGTTTGTAGCAAGGAAACTGAAGAAAGCATACACTTTTGTTTAATTTCTGATAAGGAACAAGGAAGAGCAACTGAAATCCGTTGTAATAAAAATCACCATTGGTTACATAGGAAAACAATTTCTGATGTTGTTGAAGCTCTGATCGGAGCATTCATAGTTGATAGTGGCTTTAAAGCTGCAATTGCCTTTCTTAAATGGCTAGGCATAGAAGTTGATTTCGAAGCGTCACAAGTTGTTAACATTTGCAGAGGAAGTGCTAGCTATTTTCCTCTTTCTGCTGATGTAGACATTCCATCCCTTGAACGTAAGTTAGGACATCACTTTGTTCATAAGGGTCTACTTCTCCAGGCATTTGTACATCCTTCTTACGGTAAGCATGGAGGAGGCTGTTATCAGCGGTTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATATCTGTACTCAGCTTATCCGAAACTAAAACCTGGTCAATTAACAGATTTGCGATCATTGTCTGTTAATAACAAGGCATTTGCCTGTGTAGCAGTGGATCGCAGTTTTGATAAATTTCTTTTATGTGATTCAAGCGGCCTGTCTGAGGCAATAAAAAAATATGTGGACTATATTAGAAGACCTGTATCACGCAGAGGCAATAATGAAGAGCCAAAATGTCCCAAGGCCCTGGGTGACTTAGTGGAATCTTGTGTCGGTGCCATTCTTCTTGATTCAGGATTCAATTTGAACAAAGTTTGGAAGATTATGACTTCATTCTTGGACCCAATCATGAAATTCTCCTCGAGCTTGCAGCTTAGTCCAATTAGGGATTTGCAAGAACTTTGCCAATCTCACAATTTGGATTTGCTGTTTCTGCCATCAAAACTTACTAAAACTTTTTCTGTTGAAGCCAAAGTGACTGGGAATGGTATATGTGAGACAGCTTTCGGAATCAGTCAAAATAAAAAAGAGGCTTCTAGAATTGCTTCACAGAAAATATTTTCAAACTTAAAGGCTCAAGGCTGGAAACCAAAGTCAAAAACTTTGGAAGATGTTCTGAAATCAACATTTAAGATGGAACCAGAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGATACCAACACAATTGGACAAGCAATGGTTAATGGAAACCTATACAGCAAGTCTGACCCAGAAATTCGCCCTATCCGAGAGGTAGTTGGTATGTGCTCCCCATGTGTGAAACCTGTTGATCAACACCTTCAATCTTCTCCTAAGGGAAAGCTTAGTGAAACTTTTGAAAATCATGATTGTAGTAGTGACTCATCGAGGACAGGAACAGCAAGATCACGATTGTATGAATTATGTGCTGCTTATTGCTGGAAACCTCCTACATTTGAATGCTGCAAGGAAGACGGACCAGACCACCTGAAGTTATTCACTTTCAAGGTGACCTTGGAGATAGAAGAGGTCCCAGATACGATTTTTGAGTTTATTGGGGAACCCCAATCAAAGAAGAAAGATGCTGCTGAGAGTGCGGCTGAGGGTGTATTTTGGTTCCTGGAAAAGGAAGGGTACCTGGTTAATGCTAATGGTTAA 4893 0.4059 MPDGESSTAGAGQPPMQSSSSVSDDGQSLSLSQVKIHEDSIMKDPKKIARKYQLELCKKAMKENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPKKDVCVFLAPTVALVHQQAKVIEGSTDFKVGTYCGSSKRLKRHQDWEQEIGQYEVLVMTPQILLHNLSHCFIKMEMIALLIFDECHHAQVKSNHPYAEIMKVFYKNNSTKLPRIFGMTASPVVGKGSSSEANLPKSINSLEHMLDAKVYSVEDKELQSFVTTPVINIYPYGSTANGENSLNSKIEEIKRQCIATLSRSIEDHQKRMNTKKLLSRIHDNVVFCLGNLGIWGALQASRILLSGDHSERHELVEAEGNSSDESVCNKYLAQAAELFNSQCDSVSDPSSVEILKEPFFSTKLLRLIGILSNFRLQQNMKCIIFVNRIVTARSLSFILQKLKLLRQWRSDFLVGVHSGLKSMSRKTMNVIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNTKELDIINGFERDESRMNMEITVRTSNETYITPEERIFRVESSGASVSSGYSISLLHQYCSKLPHDEYFDPKPSFYYFDDLGGIVCHITLPSNAPIHQIVSTPQLSMEASKRDACLKAIEELYKLGALSDCLLPEQDAEPEEQILGSSDSDECEEAISRGELHEMLVPSAFGHSWINEKIVHLNSYYIKFCPCPEDRDYRRFGLFIMTRLPMEAEKLELDLHLAHGRSVMTKFIPFGVVEFDKDEIKMAENFQEMFLKIILDRLEFASEFVDLAKVAETHTSTSTFYLLLPVILQEYDNIMKVDWKTVKRCLCSPIFRHPADTVDKKVFPLDIHLQLANGYRSVRDVENSLVYAPHKKLFYFVTNVIYEKNGFSSYKDSGTSRYVDHFLEKFSIHLKCPEQPLLHVKPLFNLHNLLHNRKHEDTEPHELEEYLIYLPPELCELKIVGFSKDIGSSISLLPSVMHRLGNLLIAIELKQMLSSFFPEAAEINALKVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDNLHEGDLTRRRSNVVNNSNLFKLAIRRKLQVYICDQAFDPLQFYALGRPCPRVCSKETEESIHFCLISDKEQGRATEIRCNKNHHWLHRKTISDVVEALIGAFIVDSGFKAAIAFLKWLGIEVDFEASQVVNICRGSASYFPLSADVDIPSLERKLGHHFVHKGLLLQAFVHPSYGKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLCDSSGLSEAIKKYVDYIRRPVSRRGNNEEPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDPIMKFSSSLQLSPIRDLQELCQSHNLDLLFLPSKLTKTFSVEAKVTGNGICETAFGISQNKKEASRIASQKIFSNLKAQGWKPKSKTLEDVLKSTFKMEPELIGYDETPIDVTDTNTIGQAMVNGNLYSKSDPEIRPIREVVGMCSPCVKPVDQHLQSSPKGKLSETFENHDCSSDSSRTGTARSRLYELCAAYCWKPPTFECCKEDGPDHLKLFTFKVTLEIEEVPDTIFEFIGEPQSKKKDAAESAAEGVFWFLEKEGYLVNANG. 1631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00987 1630 Pfam Type III restriction enzyme, res subunit 55 214 IPR006935 GO:0003677|GO:0005524|GO:0016787
Seca11g00987 1630 Gene3D - 383 545 IPR027417 -
Seca11g00987 1630 MobiDBLite consensus disorder prediction 1 29 - -
Seca11g00987 1630 FunFam Endoribonuclease dicer-like 1 381 544 - -
Seca11g00987 1630 Pfam Dicer dimerisation domain 574 658 - -
Seca11g00987 1630 MobiDBLite consensus disorder prediction 1522 1543 - -
Seca11g00987 1630 CDD RIBOc 1220 1370 IPR000999 GO:0004525|GO:0006396
Seca11g00987 1630 SMART PAZ_2_a_3 845 993 IPR003100 GO:0005515
Seca11g00987 1630 SMART DRBM_3 1376 1440 IPR014720 -
Seca11g00987 1630 SMART DRBM_3 1546 1616 IPR014720 -
Seca11g00987 1630 FunFam Endoribonuclease dicer-like protein 44 283 - -
Seca11g00987 1630 SUPERFAMILY dsRNA-binding domain-like 1545 1623 - -
Seca11g00987 1630 Pfam Helicase conserved C-terminal domain 397 508 IPR001650 -
Seca11g00987 1630 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Seca11g00987 1630 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 574 664 IPR005034 GO:0016891
Seca11g00987 1630 Gene3D Dicer dimerisation domain 570 666 IPR038248 -
Seca11g00987 1630 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1375 1441 IPR014720 -
Seca11g00987 1630 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1546 1620 - -
Seca11g00987 1630 ProSiteProfiles Ribonuclease III family domain profile. 1018 1163 IPR000999 GO:0004525|GO:0006396
Seca11g00987 1630 Gene3D - 1552 1622 - -
Seca11g00987 1630 PANTHER DICER-RELATED 62 1446 - -
Seca11g00987 1630 FunFam Endoribonuclease dicer-like 1 1199 1369 - -
Seca11g00987 1630 Gene3D - 1368 1445 - -
Seca11g00987 1630 Pfam PAZ domain 867 988 IPR003100 GO:0005515
Seca11g00987 1630 SUPERFAMILY RNase III domain-like 1016 1178 IPR036389 GO:0004525|GO:0006396
Seca11g00987 1630 CDD DSRM_DCL_plant 1552 1621 - -
Seca11g00987 1630 Gene3D Ribonuclease III domain 1200 1367 IPR036389 GO:0004525|GO:0006396
Seca11g00987 1630 Gene3D Ribonuclease III domain 1011 1174 IPR036389 GO:0004525|GO:0006396
Seca11g00987 1630 Gene3D - 49 305 IPR027417 -
Seca11g00987 1630 SUPERFAMILY dsRNA-binding domain-like 1330 1440 - -
Seca11g00987 1630 CDD RIBOc 1017 1174 IPR000999 GO:0004525|GO:0006396
Seca11g00987 1630 ProSitePatterns Ribonuclease III family signature. 1239 1247 IPR000999 GO:0004525|GO:0006396
Seca11g00987 1630 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 551 IPR001650 -
Seca11g00987 1630 MobiDBLite consensus disorder prediction 10 29 - -
Seca11g00987 1630 Pfam Ribonuclease III domain 1239 1348 IPR000999 GO:0004525|GO:0006396
Seca11g00987 1630 Pfam Ribonuclease III domain 1032 1163 IPR000999 GO:0004525|GO:0006396
Seca11g00987 1630 ProSiteProfiles PAZ domain profile. 867 967 IPR003100 GO:0005515
Seca11g00987 1630 SMART helicmild6 420 510 IPR001650 -
Seca11g00987 1630 SMART ultradead3 45 250 IPR014001 -
Seca11g00987 1630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 524 IPR027417 -
Seca11g00987 1630 ProSiteProfiles Ribonuclease III family domain profile. 1204 1348 IPR000999 GO:0004525|GO:0006396
Seca11g00987 1630 FunFam Endoribonuclease dicer-like 1 569 665 - -
Seca11g00987 1630 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1545 1621 IPR014720 -
Seca11g00987 1630 SMART riboneu5 1014 1184 IPR000999 GO:0004525|GO:0006396
Seca11g00987 1630 SMART riboneu5 1219 1371 IPR000999 GO:0004525|GO:0006396
Seca11g00987 1630 FunFam Dicer-like 103 862 965 - -
Seca11g00987 1630 CDD DEXHc_dicer 47 246 - -
Seca11g00987 1630 SUPERFAMILY PAZ domain 864 965 IPR036085 GO:0005515
Seca11g00987 1630 SUPERFAMILY RNase III domain-like 1203 1367 IPR036389 GO:0004525|GO:0006396
Seca11g00987 1630 Gene3D paz domain 862 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00987 Seca-Chr11 10147769 10167855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00987 408 507 Eukaryotic Initiation Factors Gene Family AT1G72730 31.000 7.36e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00987 K11592 - gmx:100818702 2736.83