Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00986 ATGTCAGGGTGGGACGAGGGAGGCGTTTACTACAGCGACCAAGCGCATTCCTGGGATGACGGCCGCGGTGAAGCCGAAGCCGCCGCCTCCAACCATTCCCTCCTTCAGAAATTCAAGGAATTCATCCGAAACTTCGAGACTAGTAACAATGTCTTCCCTTACAGAGAGAGCCTCCTCAACAACCCCAAGTTCCTTCTCATTGACATGGAAGATCTCGACTCCTTCGATCCTGATCTTCCAGCCAGACTCCGTTCTTCCCCCGCCGATTTCTTGCCCCTGTTTGAGACGGCGGCAGCACAGGTTCTGGTCAGTTTGAAGACCAAGGTGGCCGGTGATACTGGAGAAATGGAGGATCCGGCGACGGGGGATGTTCAGGTTCTCCTCACCTCCAAAGAGGATCCAGTTTCGATGAGATCGCTCGGGGCTCAATACATATCTAAGCTTGTGAAAATTGCTGGGATTACTATTGCCGCGTCCAGGACTAAGGCAAAAGCAACTTATGTCACCCTGATATGTAAGAACTGCAAGAAGGGGAAGCAAGTTCCATGTCGGCCAGGACTTGGTGGAGCAATTGTTCCTCGTTCCTGCGATCATATTCCTCAGCCCGGAGAAGAACCTTGCCCGATTGATCCATGGCTTGTGGTTCCTGACAAGAGCAAGTATGTTGATCAACAAACCTTGAAACTGCAAGAAAATCCGGAGGATGTTCCAACTGGAGAGCTTCCTAGAAACCTACTTCTCTCTGTTGATCGTCATCTTGTTCAAACAGTAGTGCCTGGCTCAAGATTGACAATCGTTGGAATCTATAGTATCTACCAGGCTTCCAACTCTTCTCAATCCCAAAAAGGAGCAGTTGCAGTTAGACAGCCTTATATTAGGGTTGTAGGAATAGAAGAAGCAAATGAGGCCAAGTCTCGAGGTCCAGCTGCATTTACACCAGAAGAGATAGAAGAATTCAAAAAATTTGCTGCTGAACCTGATGCATATAAGAATATATGCTCCAAGATTGCTCCATCTATATTTGGGCATGATGATGTCAAAAAGGCCGTGGCTTGTCTTCTTTTTGGAGGGTCGAGAAAGAATTTGCCTGATGGAGTCAAATTAAGAGGTGATATCAATGTGTTGCTTCTGGGGGATCCATCTACAGCAAAGTCACAGTTTCTCAAGTTTGTTGAAAAGACAGCTCCAATTGCTGTCTATACTTCTGGAAAAGGCTCCTCAGCTGCTGGTCTCACAGCTTCTGTAATCCGAGATAGCAGCACTCGTGAGTTTTATCTTGAAGGAGGTGCCATGGTCTTGGCAGATGGAGGTGTTGTGTGCATTGATGAGTTTGACAAGATGAGGCCAGAAGATAGGGTTGCCATCCATGAAGCAATGGAACAGCAAACTATATCCATAGCCAAGGCAGGAATAACAACTGTTCTTAATTCAAGGACTTCTGTTCTTGCTGCTGCCAACCCTCCATCAGGACGTTATGATGATCTTAAGACTGCACAGGATAATATTGATTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATCTTCATTGTGAAAGACATCAGAATGTACAGTCAAGACAAGATTATAGCTAGTCATATCATAAAGGTTCATGCATCAGCTGCTACAACGATGGGTGAGAGCAAGGTTTCCAAAGAAGAGAATTGGCTGAAGAGGTATTTACAATATTGTCGAGCTGAATGTCACCCTCGTCTATCAGAATCTGCAGCAACATTACTGCAAAATAATTATGTGAAAATCAGACAGGATATGAGGCAGCAAGCAAATGAAACCGGGGAGGCTGCTGCAATACCAATTACCGTAAGGCAGCTGGAAGCTATTGTTAGGTTGAGTGAGGCACTTGCAAAGATGAAATTGTTAGTATTGCTGTTATTCTTTACTATACTTTGTTCCTTTTGTCTAGAACTCCATCTGGTGCAATTTCATAAAAAGAATAAAAAGACATGA 1968 0.4487 MSGWDEGGVYYSDQAHSWDDGRGEAEAAASNHSLLQKFKEFIRNFETSNNVFPYRESLLNNPKFLLIDMEDLDSFDPDLPARLRSSPADFLPLFETAAAQVLVSLKTKVAGDTGEMEDPATGDVQVLLTSKEDPVSMRSLGAQYISKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAIVPRSCDHIPQPGEEPCPIDPWLVVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTIVGIYSIYQASNSSQSQKGAVAVRQPYIRVVGIEEANEAKSRGPAAFTPEEIEEFKKFAAEPDAYKNICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASAATTMGESKVSKEENWLKRYLQYCRAECHPRLSESAATLLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLLVLLLFFTILCSFCLELHLVQFHKKNKKT. 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00986 655 FunFam DNA helicase 164 222 - -
Seca11g00986 655 FunFam DNA helicase 29 117 - -
Seca11g00986 655 Pfam MCM P-loop domain 316 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00986 655 Gene3D - 137 272 IPR012340 -
Seca11g00986 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 624 IPR027417 -
Seca11g00986 655 SUPERFAMILY Nucleic acid-binding proteins 37 294 IPR012340 -
Seca11g00986 655 Gene3D - 309 627 IPR027417 -
Seca11g00986 655 SMART mcm 133 635 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca11g00986 655 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00986 655 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00986 655 PRINTS Mini-chromosome maintenance (MCM) protein family signature 508 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00986 655 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 470 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00986 655 PRINTS Mini-chromosome maintenance (MCM) protein family signature 369 384 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00986 655 Pfam MCM OB domain 137 272 IPR033762 -
Seca11g00986 655 FunFam DNA helicase 309 630 - -
Seca11g00986 655 Coils Coil 654 655 - -
Seca11g00986 655 ProSiteProfiles MCM family domain profile. 328 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00986 655 Gene3D - 30 116 - -
Seca11g00986 655 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 29 626 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca11g00986 655 ProSitePatterns MCM family signature. 437 445 IPR018525 GO:0003677|GO:0005524|GO:0006260
Seca11g00986 655 Pfam MCM N-terminal domain 36 125 IPR027925 -
Seca11g00986 655 Pfam MCM AAA-lid domain 556 626 IPR041562 -
Seca11g00986 655 CDD MCM5 331 626 - -
Seca11g00986 655 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 288 300 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Seca11g00986 655 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 564 579 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Seca11g00986 655 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 164 176 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Seca11g00986 655 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 138 153 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Seca11g00986 655 Gene3D - 164 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00986 Seca-Chr11 10137837 10143855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00986 1 626 Core DNA Replication Machinery Family AT2G07690 80.032 0.0 1042
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00986 K02209 - cave:132184345 1115.91