LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g00984	ATGGCCTCTGACATATCATTTGAAGACCTCAAGAACGAGAATGTGGATCTTGAAAACATTCCTGTTGAGGAAGTTTTTAAGCAACTAAAATGTACCAGGGAGGGTCTAACAACAACTGAGGGAGAGAACAGGCTCCAAATTTTTGGGCCTAATAAGCTAGAGGAGAAAACAGAGAGCAAGTTCCTTAAATTCTTGGGTTTTATGTGGAATCCACTATCATGGGTTATGGAGGCTGCTGCTGTCATGGCCATTGCATTGGCCAATGGAGGGGGCAAACCACCAGATTGGCAAGATTTTGTTGGTATTGTTGTATTGCTCATCATCAACTCTACCATTAGTTTCATTGAAGAAAACAATGCAGGCAATGCTGCAGCAGCTTTAATGGCAGGTCTTGCACCCAAAACCAAGGTGTTGAGGGATGGAAAATGGAGTGAACAAGAGGCAGCAATTTTGGTTCCAGGAGATTTGATCAGCATCAAGTTGGGAGATATTGTCCCAGCTGATGCACGTCTCTTGGAGGGAGATCCCCTTAAGATTGACCAATCTGCCCTTACTGGTGAGTCCTTGCCAGTCACTAAGCACCCTGGTCAAGAGGTCTTCTCTGGTTCCACTTGCAAACAAGGTGAGTTAGAGGCTATTGTCATTGCCACTGGTGTCCACACCTTCTTTGGTAAGGCTGCACATCTTGTGGACAGCACCAACAATGTTGGTCACTTCCAAATGGTGTTGACATCTATTGGAAACTTCTGTATTTGCTCTATTGCTGTGGGCATGTTGATTGAGATCATTGTGATGTACCCCATCCAACAAAGGGCATACAGAGATGGAATTGACAACTTGTTGGTTCTTCTCATTGGAGGTATCCCAATTGCCATGCCAACAGTCTTGTCTGTGACCATGGCTATTGGGTCTCACCGTTTGTCTGAGCAAGGAGCCATCACCAAGAGGATGACAGCCATTGAAGAAATGGCTGGGATGGATGTTCTCTGCAGTGACAAGACTGGAACTCTTACCCTTAACAAGCTTACTGTGGACAAGAGCATGATTGAGGTGTTCGTCCAAGGTATGGACAAGGACACCCTTGTCTTATATGCTGCTAGGGCTTCTAGGGTTGAAAACCAGGATGCTATTGATGCTTCAATTGTTGGGATGCTGGGCGACCCCAAAGAGGCAAGAGCAGGAATCACTGAGGTGCATTTCTTGCCTTTCAATCCTGTGGATAAGCGCACAGCTATTACCTACATTGATGGTAAAGGCAACTGGCATAGAAGCAGCAAGGGTGCTCCTGAGCAAATTATTGAACTTTGTGGCCTTAAGGGAGAGACTTTGAAAAAGGCCCATGAGATCATTGATCAGTTTGCTAATCGTGGTCTACGTTCATTGGGTGTTGGACGCCAGACTGTTTCAGAAAAGACTAAGGAAAGTGCAGGAGACTCATGGGAGTTTTTGGGTCTCTTGCCCCTCTTTGACCCTCCAAGGCATGATAGTGCAGAGACTATTCGTCGTGCTCTTGACCTTGGTGTCAATGTTAAGATGATCACTGGTGACCAACTTGCCATTGGGAAAGAAACTGGTCGCAGGCTTGGAATGGGCACCAATATGTATCCTTCATCCTCCCTTCTTGGTGAGAACAAGGACCCTGCCATTGCATCAATCCCAATTGATGAACTCATTGAGAAGGCTGATGGATTTGCTGGAGTCTTCCCTGAGCACAAGTATGAGATTGTGAAGAGATTGCAAGAGAGAAAACACATTTGTGGAATGACTGGAGATGGTGTGAATGATGCTCCAGCATTGAAAAAGGCAGACATTGGTATTGCTGTGGCTGATGCAACTGATGCTGCAAGAAGTGCCTCAGACATTGTTTTGACAGAGCCAGGACTAAGTGTTATTGTGAGTGCTGTGTTAACTAGCAGGGCCATCTTCCAGAGGATGAAGAACTACACAATATATGCTGTTTCCATCACTATCCGTATTGTGTTTGGGTTCATGCTTGTAGCTTTAATCTGGAAGTTTGACTTCTCACCTTTCATGGTCCTTATCATTGCCATCTTGAATGATGGAACCATCATGACCATCTCTAAGGACAGGGTGAAACCTTCTCCATTACCTGACTCATGGAAGCTTAAAGAAATCTTTGCTACTGGAGTTGTTCTTGGAGCTTACATGGCCATCATAACTGTGGTGTTCTTCTATTTAGTTCATGACACTGATTTCTTCACCGTAATATGTTTTGTGTTATTCTTTCAGAGAGTTTTTGGTGTCAACTCAATTGCAGACAGTGAGGAGCAACTTAACTCAGCTCTTTACCTTCAAGTGAGTATTATTAGTCAGGCACTCATCTTTGTGACCAGGTCAAGGGGTTGGTCTTACATTGAACGTCCTGGCTTTTTGCTTGTTACAGCCTTCTTTTGTGCACAATTGGTGGCCACTATCATTGCTGCATATGCACACTGGGACTTTGCTAGAATCAATGGAATTGGTTGGGGATGGGCTGGAGTAATCTGGATCTTTAGCATTGTTACCTACATTCCTCTTGATATCCTTAAGTTCCTCATCCGCTTGGGATTGTCAGGCAGGGCTTGGGACAACATGCTTGAGAACAAGACTGCTTTCACAACAAAGAAGGACTATGGAAAGGGAGAAAGGGAGGCTCAATGGGCTTTGGCTCAACGCACACTTCATGGTCTCCAAGTTACAGAATCCCATAGGGGCAACCACCATGAACAATCTGAAATTGCTGAGCAAGCTAAGAGGCGTGCTGAGGCTGCCAGGCTCAAAGAGCTCCACACACTCAAGGGACATGTTGAGTCTGTGGTGAAATTGAAGGGTCTTGACATTGATACCATCCAACAACACTACACACTCTAA	2871	0.4507	MASDISFEDLKNENVDLENIPVEEVFKQLKCTREGLTTTEGENRLQIFGPNKLEEKTESKFLKFLGFMWNPLSWVMEAAAVMAIALANGGGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKHPGQEVFSGSTCKQGELEAIVIATGVHTFFGKAAHLVDSTNNVGHFQMVLTSIGNFCICSIAVGMLIEIIVMYPIQQRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSMIEVFVQGMDKDTLVLYAARASRVENQDAIDASIVGMLGDPKEARAGITEVHFLPFNPVDKRTAITYIDGKGNWHRSSKGAPEQIIELCGLKGETLKKAHEIIDQFANRGLRSLGVGRQTVSEKTKESAGDSWEFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDPAIASIPIDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGAYMAIITVVFFYLVHDTDFFTVICFVLFFQRVFGVNSIADSEEQLNSALYLQVSIISQALIFVTRSRGWSYIERPGFLLVTAFFCAQLVATIIAAYAHWDFARINGIGWGWAGVIWIFSIVTYIPLDILKFLIRLGLSGRAWDNMLENKTAFTTKKDYGKGEREAQWALAQRTLHGLQVTESHRGNHHEQSEIAEQAKRRAEAARLKELHTLKGHVESVVKLKGLDIDTIQQHYTL.	957

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g00984	956	FunFam	Plasma membrane ATPase	133	217	-	-
	Seca11g00984	956	FunFam	Plasma membrane ATPase	342	489	-	-
	Seca11g00984	956	ProSitePatterns	E1-E2 ATPases phosphorylation site.	332	338	IPR018303	-
	Seca11g00984	956	SFLD	C1.7: P-type atpase like	312	641	-	-
	Seca11g00984	956	SMART	Cation_ATPase_N_a_2	16	88	IPR004014	-
	Seca11g00984	956	NCBIfam	plasma-membrane proton-efflux P-type ATPase	35	816	IPR006534	GO:0008553\|GO:0016020\|GO:0120029
	Seca11g00984	956	SFLD	p-type atpase	312	641	IPR044492	-
	Seca11g00984	956	PRINTS	P-type cation-transporting ATPase superfamily signature	612	624	-	-
	Seca11g00984	956	PRINTS	P-type cation-transporting ATPase superfamily signature	484	495	-	-
	Seca11g00984	956	PRINTS	P-type cation-transporting ATPase superfamily signature	506	516	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g00984	Seca-Chr11	10127142	10132676	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g00984	1	956	Primary Pumps ATPases	AT3G42640	84.326	0.0	1640

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g00984	K01535		-	gmx:100798717	1702.95

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