LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g00980	ATGGCTTCAAAACTCATTACTTTCTTCATTCTCTTCCTCCCTCTCAAATCACTCTCTTCTGCATATACCCCGTCATGGGTGAAAGCTGGTTATTACTATTCTGGTAGTGAAATTTCGGCTTCAGACATAAAAGCCACGCTTTTCAATCACCTCTTTTGCGCTTTTGCTTATATAAACTCCACCAACTACAACATATTTATCAACTCTTCGGAGGAGCACAAGTTCTCCACCTTCACCGACACTGTAAAGCTCCAAAACCCATCTGTTTCAACGCTTTTATCCATCTGGGGTGGCAGAGACGACCCTTCAGTGTTCAACTCAATGCTAAACCAATCTTCTCATAGGAAATCTTTCATTGATTCTTCAATCAGTTCAGCAAGGCAATATGGGTTTCAGGGCATAGACCTTTATGCAGTCAGGCCAAGGCAGGGTAAGGACCTTGCCAATTTTGGAACCCTTTTGAAGGAGTGGCGAGTTGCAATAACTTCAGAGGCAAGAAACTCTAACAAGCCAGAGTTAGCATTGGTGATGGCAGGTTACTACCTCAAAGCTTCAGACTCCTTCAGTTACCCCTTCGAATCAATGCAGATGAACTTGGATTGGGTACATCTTGTGTCATATAATTACTATCTTCCTAAAAAGGACAATGTCACTGGTTTTCATGCTGCTTTATATGGTCCATCTGGTTGGGATAATACTGATTCTAGTATCAAAGAGTGGAGGAGAAGGGGATTTTCATCTAGCAAGCTTGTAATTGGCTTGCTTTATCATGGATATGCATGGAAACTTGTGAACCCAGGAGACAATGGCGTGGGAACACCAGCATCAGGACCTGCCATTACAAAGGACGGTTCCATGGCTTATAAGCTGATAAAGAGTTACATCAGAAGCTTTGGAGGTGTTGTTGTTTCACATTATAATGCTACTTTTGTGGTGAATCACTTCACAGTTGCATCCACCACTTGGGTTAATTTTGATGATGCGGAGGTAATCAGGGCTAAAGTTTCTTATGCAAAGAAAAATGGGCTACTTGGTTACAGCATGTTCCAATTGAGTAGTGATGAAAATTGGGTCCTTTCAAGGGCAGCTCAAGAAGTAGATGAAGATCATCATAAGAGGAGGTTGCTGATAATTGTTCTGCTTACTACTCTGACTTTTGCACTACTATTGGGAATATTATTTTGCTACTACCACCGAGCAGGAACTGTAGCCACTATTACAAGAATATTTTATAAACTAAGGAGGTATTTATCAGCAGCTGAAGAAAAAGATCTTGATGGAAATCATTCTGATCTGATAGTGTTCAGTTATCTCACAATTAAAGTGGCAACAGATAACTTCTCAAAAGATAATAAGCTTGGAGAGGGGGGATTTGGCACAGTGTACAAGGGAAAATTACGGAAGGGACAGGAAATAGCTGTAAAAAGACTCTCAGAAACTTCAAATCAAGGCCTTGAAGAGTTCAAAAATGAGATCACACTTACAGCAAGACTACAGCATGTGAATTTAGTTAGACTTCTGGGTTACTGCACAAAAAGGGATGAGAAGGTTCTGATCTATGAATACCTGCCAAACAAAAGCTTAGATCATTTCCTTTTTGATCCAAGGAAATCAATTCTTTTAGACTGGAGCAAGCGTGTCAATATCATTGAAGGGGTTACTCAAGGCCTTGTTTATCTCCAAGAGTATTCAAATTTTACTATAGTCCATCGAGATCTTAAAGCTAGTAATGTTTTGTTAGATCATGAGATGAATCCCAAGATATCATATTTTGGCATGGCTAGAATTTTCAGGAAATATGACCTTGAAGCAAACACAAACAGGATCGTGGGAACATATGGGTATGTACCACCTGAGTATGTGAGAAAAGGCATATACTCAACCAAGTACGATGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATTAGTGGAAAAAGGACTTCATGTTATTACGGTACACATGAAAATATGAACCTTTTGGAATATGCATATGAGCTGTGGATGGAAGGCAGGGGTGTAGAGTTTATTGACCCGTCATTGGATGATACAACATCACCTTATAAAATCATGAGATGCATGCAGGTGGCTCTGTTGTGCGTTCAAGATAACTCTGGAGATAGACCTTCCATGTTAGAAGTTGATTCACTGCTCAAGAATGAAGCTGCACCTATTGGTACTCCCAAAATGCCAGCTTTTTCAATTAAAAAACATGAAGATGAGGAAGAAACATTCCACTATGGGATCAAACTTTCTTCAAACAATGATGTTACAATTTCTGAACTGGCACCAAGATGA	2298	0.3973	MASKLITFFILFLPLKSLSSAYTPSWVKAGYYYSGSEISASDIKATLFNHLFCAFAYINSTNYNIFINSSEEHKFSTFTDTVKLQNPSVSTLLSIWGGRDDPSVFNSMLNQSSHRKSFIDSSISSARQYGFQGIDLYAVRPRQGKDLANFGTLLKEWRVAITSEARNSNKPELALVMAGYYLKASDSFSYPFESMQMNLDWVHLVSYNYYLPKKDNVTGFHAALYGPSGWDNTDSSIKEWRRRGFSSSKLVIGLLYHGYAWKLVNPGDNGVGTPASGPAITKDGSMAYKLIKSYIRSFGGVVVSHYNATFVVNHFTVASTTWVNFDDAEVIRAKVSYAKKNGLLGYSMFQLSSDENWVLSRAAQEVDEDHHKRRLLIIVLLTTLTFALLLGILFCYYHRAGTVATITRIFYKLRRYLSAAEEKDLDGNHSDLIVFSYLTIKVATDNFSKDNKLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKRDEKVLIYEYLPNKSLDHFLFDPRKSILLDWSKRVNIIEGVTQGLVYLQEYSNFTIVHRDLKASNVLLDHEMNPKISYFGMARIFRKYDLEANTNRIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGTHENMNLLEYAYELWMEGRGVEFIDPSLDDTTSPYKIMRCMQVALLCVQDNSGDRPSMLEVDSLLKNEAAPIGTPKMPAFSIKKHEDEEETFHYGIKLSSNNDVTISELAPR.	766

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g00980	765	SMART	serkin_6	447	723	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g00980	765	SUPERFAMILY	Protein kinase-like (PK-like)	430	738	IPR011009	-
	Seca11g00980	765	Gene3D	Phosphorylase Kinase; domain 1	410	522	-	-
	Seca11g00980	765	Pfam	Glycosyl hydrolases family 18	31	354	IPR001223	GO:0005975
	Seca11g00980	765	FunFam	Uncharacterized protein	422	522	-	-
	Seca11g00980	765	ProSitePatterns	Protein kinases ATP-binding region signature.	453	475	IPR017441	GO:0005524
	Seca11g00980	765	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	26	370	IPR001223	GO:0005975
	Seca11g00980	765	FunFam	Uncharacterized protein	523	727	-	-
	Seca11g00980	765	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	299	762	-	-
	Seca11g00980	765	Gene3D	Transferase(Phosphotransferase) domain 1	523	725	-	-
	Seca11g00980	765	Pfam	Protein tyrosine and serine/threonine kinase	449	714	IPR001245	GO:0004672\|GO:0006468
	Seca11g00980	765	Gene3D	Glycosidases	41	355	-	-
	Seca11g00980	765	ProSiteProfiles	Protein kinase domain profile.	447	718	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g00980	765	SUPERFAMILY	Chitinase insertion domain	258	325	IPR029070	-
	Seca11g00980	765	CDD	STKc_IRAK	453	720	-	-
	Seca11g00980	765	SUPERFAMILY	(Trans)glycosidases	26	366	IPR017853	-
	Seca11g00980	765	SMART	2g34	26	354	IPR011583	GO:0008061
	Seca11g00980	765	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	568	580	IPR008271	GO:0004672\|GO:0006468
	Seca11g00980	765	Gene3D	-	256	325	IPR029070	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g00980	Seca-Chr11	10085655	10089468	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g00980	435	765	Receptor kinase-like Gene Family	AT4G11530	50.148	4.78e-113	356

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca11g00980		Glyco_hydro_18	3.4e-55	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g00980	-		-	aprc:113847882	1230.31