Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00979 ATGATTAAAAACGCTTCTTCAAGGAAACCCTTCATTCAATCTTCAATAAGAATAGCTAGACTTTATGGATTTCAAGGCTTGGACTTGTCCTGGCCCACCATTGAGACAACCTCTGATGCCTACAATTTGGGACAGCTTTTCCAAGAGTGGCGTGCTGCTGCAAAATCTGAGGCAGAAAAATTGATTTTGACTGCAGCTGTTCTAGGTTCACCTTATTTGGAAATTGGGTCTTACCCAATGGAGTCAATTAGGAGTAATTTGAATTGGGTACATGTTAATGCTTATGATTACCATACACCATTGGGACAGAACTTCACTGGTGCACCTTCAGCTTTATATGACCCTGCAAGTGATTTCAATACAGATTACAATATTAAGGCATGGATCGGGAATGGGTTAGCAGCTAACAAGTTGATTTTGGGTTTGCCTTTCTATGGATATGTATGGAAACTCCAAAACCCCAATAATAATGCAATAGGTGCACCAGCAACAGGTCCAGCAGATGGTGAAGATGGATCTAGAAGTTATAAGGACATAAAAAATAATATTCAGCAAAATGGAGGTGTGGTACTGTATAATGACACTTATGTAACAAATTACTGCTCATATGGATCAAATTGGATTGGCTTTGATGATGTTAAGGTTGTTCAAAAGAAGGTGTCATATGCCAGGGAAAAACAGCTACTTGGCTATTATGTGTGGCAAGTTTCCCATGATGACGATAAGTGGACACTTACCAGTGCAGCTGCAGGTAAAACAAATGATGCTTTTATCTATGATTTACTGTTGAATTCTTCCTTCAAATCTATAGGAACGGTTAGTGCTGCAAAATATTCTGGCTCTGAATGGAATAAAAATGTTTCCGGACCTTTTCATGGGGAAGCTCCTGATTTGCATGTCTATAGATTTTCTGACATTGAAGCAGCTACAGATAATTTTTCGTATGAAAATAAGCTTGGAGAGGGTGGTTATGGTCCCGTTTTCAAGGGCATCCTTCCTGATGGCCAGGAAATAGCAGTAAAAAAATTATCAACAGCTTCTACACAAGGATTTGAAGAATTCAAAAATGAGGTAACACTCACTGCAAGGCTACAACATGTGAATCTTGTTCGGTTGTTGGGTTTCTGCATTGAAAGAGAGGAGCAGATGCTGGTGTATGAGTACATGGAAAATAAAAGCTTGGACTTCTACCTCTTTGATCCTATTAGACGGTATATGTTAGGTTGGGATAAGCGTGTTGGCATCATTGAAGGAGTTACACGAGGTCTTCTTTATCTTCAAGAATATTCAAGATTCACCATAATTCATAGAGACATAAAAGCCAGCAATATTTTATTAGACACTGAGATGAAGCCAAAGATATCAGACTTTGGGATGGCAAGAATATTCACAAAAGATGAACAAGAAGCAAATACTAGCAAGATTGTGGGAACATATGGTTATGTTCCTCCTGAATATGTTAAGAAAGGTGTGTACTCTACTAAATCTGATGTCTATAGTTTTGGGGTCCTACTTCTACAAATTATAAGTGGCAAGAAGACTTCTTCCTTCTATGGAGAGAATGAAGATTTAAAGCTCCTGGAGTATGCTTATGAGTTATGGAAAGAAGGGAAGGGTATGGAATTCATGGATCTTTCACTTGATGACACATCTTCACTATGCAAACTAATGAGATGCATGCAAATTGCTTTGTTATGCGTCCAAGAACATGCCAATGATAGGCCTTCCATGCTTGAAGTTTCTTCAATGTTGAGAAACGAAAATAACTCTCTAGCCATCCCCAAAAGGCCTGCATTTTCAAAAGTAAATGAGTGTCAACCCCTAGAAATTATTTCAGTCAATGATGCAACCATCACTGAAATTGTGAAATCAATTCTTGTAGACTGGAGCAAGCGTGTCAACATCATTGAAGGGGTTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATAATCCACCGAGATCTTAAAGCTAGTAATGTTTTGTTAGATCATGAGATGAATCCCAAGATATCAGATTTTGGTATGGCTAGAATTTTCAGGAAATATGACCTTGAAGCAAACACAAGCAGGATCGTAGGAACATATGGGTATGTACCACCTGAGTATGTGAGGAAAGGCATATACTCAACCAAGTACGACGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGTGGAAAAGGGACTTCATGTTATTATGGTACACATGAAAATATGAACCTTTTGGAATATGCATATGAGCTATGGAGGGAAGGTAGAGGTGTGGAGTTTATTGACCCATCATTGGATGATACAACATCACCTTGTAAAATCATGAGATGCATGCATGTGGCTCTGTTGTGTGTTCAAGAGAACTCTGCAGATAGGCCTTCCATGTTAGAAGTTGATTCACTGCTTAAGAATGAATATGCACCTATTGAAACTCCCAAAATGCCTGGTTTTTCAATGAAAAAACATGAAGATGAGAAAGAAACATCTCACTGCGGGATCAAACTTTCCTCAATCAATGATGTTACAATTTCTCAACTGGAACCAAGATGA 2556 0.3834 MIKNASSRKPFIQSSIRIARLYGFQGLDLSWPTIETTSDAYNLGQLFQEWRAAAKSEAEKLILTAAVLGSPYLEIGSYPMESIRSNLNWVHVNAYDYHTPLGQNFTGAPSALYDPASDFNTDYNIKAWIGNGLAANKLILGLPFYGYVWKLQNPNNNAIGAPATGPADGEDGSRSYKDIKNNIQQNGGVVLYNDTYVTNYCSYGSNWIGFDDVKVVQKKVSYAREKQLLGYYVWQVSHDDDKWTLTSAAAGKTNDAFIYDLLLNSSFKSIGTVSAAKYSGSEWNKNVSGPFHGEAPDLHVYRFSDIEAATDNFSYENKLGEGGYGPVFKGILPDGQEIAVKKLSTASTQGFEEFKNEVTLTARLQHVNLVRLLGFCIEREEQMLVYEYMENKSLDFYLFDPIRRYMLGWDKRVGIIEGVTRGLLYLQEYSRFTIIHRDIKASNILLDTEMKPKISDFGMARIFTKDEQEANTSKIVGTYGYVPPEYVKKGVYSTKSDVYSFGVLLLQIISGKKTSSFYGENEDLKLLEYAYELWKEGKGMEFMDLSLDDTSSLCKLMRCMQIALLCVQEHANDRPSMLEVSSMLRNENNSLAIPKRPAFSKVNECQPLEIISVNDATITEIVKSILVDWSKRVNIIEGVTQGLLYLQEYSNFTIIHRDLKASNVLLDHEMNPKISDFGMARIFRKYDLEANTSRIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKGTSCYYGTHENMNLLEYAYELWREGRGVEFIDPSLDDTTSPCKIMRCMHVALLCVQENSADRPSMLEVDSLLKNEYAPIETPKMPGFSMKKHEDEKETSHCGIKLSSINDVTISQLEPR. 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00979 851 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 611 812 - -
Seca11g00979 851 Gene3D Transferase(Phosphotransferase) domain 1 619 813 - -
Seca11g00979 851 Gene3D Transferase(Phosphotransferase) domain 1 389 598 - -
Seca11g00979 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Seca11g00979 851 Pfam Protein kinase domain 626 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00979 851 Gene3D Glycosidases 1 240 - -
Seca11g00979 851 ProSiteProfiles Protein kinase domain profile. 588 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00979 851 SUPERFAMILY Chitinase insertion domain 145 210 IPR029070 -
Seca11g00979 851 Pfam Glycosyl hydrolases family 18 1 239 IPR001223 GO:0005975
Seca11g00979 851 CDD STKc_IRAK 319 584 - -
Seca11g00979 851 Gene3D Phosphorylase Kinase; domain 1 279 388 - -
Seca11g00979 851 ProSiteProfiles Protein kinase domain profile. 313 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00979 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Seca11g00979 851 SUPERFAMILY Protein kinase-like (PK-like) 296 600 IPR011009 -
Seca11g00979 851 Pfam Protein tyrosine and serine/threonine kinase 315 583 IPR001245 GO:0004672|GO:0006468
Seca11g00979 851 SUPERFAMILY Protein kinase-like (PK-like) 622 823 IPR011009 -
Seca11g00979 851 FunFam Uncharacterized protein 389 594 - -
Seca11g00979 851 SUPERFAMILY (Trans)glycosidases 1 253 IPR017853 -
Seca11g00979 851 Gene3D - 144 210 IPR029070 -
Seca11g00979 851 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 290 602 - -
Seca11g00979 851 SMART 2g34 1 239 IPR011583 GO:0008061
Seca11g00979 851 SMART serkin_6 313 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00979 851 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 256 IPR001223 GO:0005975
Seca11g00979 851 FunFam Chitotriosidase-1 144 210 - -
Seca11g00979 851 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 280 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00979 Seca-Chr11 10065334 10076197 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00979 627 851 Receptor kinase-like Gene Family AT4G11480 44.681 3.32e-61 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca11g00979 PK_Tyr_Ser-Thr 5.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00979 - - vun:114175226 878.626