Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00964 ATGCAAGGCCTTAACTCCCTCTTGAACTCTTCTTCTCAAATTCCCCACAACAACAACAACAATAATCAACCGCAGATCCAAATGAACCACTTCGAACCCACTTCCTCCCAAGATGATTTCCTCAAACAAATGCTCTCCAACCTTCCTTCTTCCTCCTGGACCCTCGACCCCACCCCCAAGCCCTTATGGGACGAAACGCCACCTGAGAATGTGCCTTTCCCCTACGACGAACACGCCAACTTAGCCTCCAAGTTCCGCAACCACCAGATCAACGATAAGACAGCAGCTCTCATGCTTCTCATGTCCAGAGGCGCCACCGATTCCGGTCTTCTCCAGATGCCGTTGTCGTTGGCCGGCGGAGACTCCTCAAACGACGTCGTTAACGTCTCCACCTTCAAATCTACTACTCCCGCTGGTGACGGTTCTGTTCAAGCTATGTATAACGGCTTCCCTGGATCTCTCCAGAACGCCGTTCAACCTTCCGAGCAAACTCACCATTTTCAACCTCCTCAGGGTCAGGGGCAGAGCTTTGGAGCTTCGCCGAGCGCAACGAACCAGGCTCCGGTCGGTGGTGCACCTGGTCAGCCGAAGCAGAGGGTCAGGGCTAGGAGAGGTCAAGCCACCGACCCACACAGCATCGCCGAAAGGTTAAGAAGGGAAAGAATCGCAGAGAGAATGAAGGCCTTGCAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTGCAGCTCCAAGTCAAGGTATTGAGCATGAGCAGATTGGGCGGAGCAGCTGCTGTGGCTCCCCTTGTTGCTGATATGTCCTCAGAGGGAGGTGGTGACTGCGTTCAAACTAACGCCAACACAAAAACGGCGTCGTCGTCGAATGACAGCCTCGTGATGACGGAGCAGCAGGTGGCGAAGCTCATGGAGGAAGATATGGGCTCAGCCATGCAGTACCTACAGGGCAAAGGCCTCTGCCTCATGCCTATTTCTCTTGCCACCGCCATCTCCACAGCCACGTGTCACACCAGGAATCCCTTGATCAACGCCACAAATAACAATATCAACGGTGGTGATGGGCCCCCTTCTCCCGGTATGTCCGTGAACAGCATCGTCAAAGACGCAGCTTCCGTTTCCAAGTCGTGA 1167 0.5381 MQGLNSLLNSSSQIPHNNNNNNQPQIQMNHFEPTSSQDDFLKQMLSNLPSSSWTLDPTPKPLWDETPPENVPFPYDEHANLASKFRNHQINDKTAALMLLMSRGATDSGLLQMPLSLAGGDSSNDVVNVSTFKSTTPAGDGSVQAMYNGFPGSLQNAVQPSEQTHHFQPPQGQGQSFGASPSATNQAPVGGAPGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCVQTNANTKTASSSNDSLVMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINATNNNINGGDGPPSPGMSVNSIVKDAASVSKS. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00964 388 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 343 - -
Seca11g00964 388 FunFam Transcription factor bHLH66 203 268 - -
Seca11g00964 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
Seca11g00964 388 SMART finulus 212 261 IPR011598 GO:0046983
Seca11g00964 388 MobiDBLite consensus disorder prediction 134 191 - -
Seca11g00964 388 MobiDBLite consensus disorder prediction 1 31 - -
Seca11g00964 388 Gene3D - 201 263 IPR036638 GO:0046983
Seca11g00964 388 MobiDBLite consensus disorder prediction 134 214 - -
Seca11g00964 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 266 IPR036638 GO:0046983
Seca11g00964 388 Pfam Helix-loop-helix DNA-binding domain 211 256 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00964 Seca-Chr11 9878922 9882345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00964 192 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 71.505 4.26e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g00964 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00964 - - psat:127138414 452.595