LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g00961	ATGAGAAACCATTGGTTCGCCCCAACTGAGGTAGGTGCCTCTACCAAACGCAGAACCGGCGGCAGAAATTGCCACCGCAAACACGTCGAAGACGGCAGTAACAGCGAGGGGCATTCAACTCTGCTCCATGGCAAATACGAGCTAGGTCGGATTTTAGGCCACGGAACCTTCGCGAAGGTGTATCACGCGCGGAACTTGCAAACAGGGAAGAACGTCGCGATGAAGGTAGTTGCGAAGGAGAAGGTCATAAAAGTTGGAATGATGGAGCAGATCAAGAAAGAGATCTCCGTCATGAAGATGGTGAAACACCCGAATATCGTTGAGCTTCATGAGGTTATGGCTAGCAAATCCAAGATCTACATCGCCATGGAGCTTGTTCGTGGTGGTGAGCTCTTCAACAAGGTAGCTAAAGGTCGATTGAAAGAAGACCTCGCCAGAGTCTACTTTCAGCAGTTAATCTCCGCCGTTGATTTCTGCCACAGCCGCGGCGTTTACCACCGTGACCTCAAGCCGGAGAATCTTCTCCTTGACGAAGATGGAAACCTTAAGGTCTCTGATTTTGGTCTCAGCACCTTCTCCGGCCAGGATGGATTGTTGCACACCACGTGCGGCACTCCGGCGTATGTTTCGCCGGAGGTGATTGCGAAGAAAGGCTACGACGGTGCTAAGGCTGATATTTGGTCTTGTGGAGTAATCCTCTATGTGCTTCTTGCAGGGTTTTTACCTTTTCAGGATGATAATTTGGTTGCTATGTATAAGAAGATTTACAGAGGTGACTTCAAATGTCCACCTTGGTTCTCTGTGGAAGCTCGAAGGCTTGTTACGAAGCTTCTAGATCCGAATCCGAATAATCGAATAACAATTTCCAAGATCATGGACTCGTCTTGGTTCAAGAAACCGGTGCCGAAGAGCATGATGACGGCGAGGAGGAAAGAGGAAGAGGCGTTTGATTTTGAGATGAAGTCGAATGTACCAACGACGATGAACGCGTTTCACATAATTTCGCTATCGGAAGGGTTTGATTTGTCTCCGTTGTTTGAGGAGAAGAAGAGAGAGGAGAGGGAGGAGCTGAGGTTCGCGACGGCGGGGACGCCGAGCAGAGTGATATCGAGATTGGAGGAGGTGGCGAAGGCGGTGAAGTTCGATGTGAAGAGTAGTGATACGAAGGTGAGGCTTCAGGGGCAAGAGCGTGGGAGGAAGGGGAAGTTGGCTATTGCGGCGGATATTTACGCCGTGACGCCGTCGTTTATGGTGGTGGAGGTGAAGAAAGATAATGGTGACACTTTGGAGTATAATCAGTTCTGCAGCAAAGAGCTTCGTCCTGCGCTTAAAGATATCTTCTGGACTTCCTCTGAGAATTCGACGCCTGCAGCTTGA	1377	0.4967	MRNHWFAPTEVGASTKRRTGGRNCHRKHVEDGSNSEGHSTLLHGKYELGRILGHGTFAKVYHARNLQTGKNVAMKVVAKEKVIKVGMMEQIKKEISVMKMVKHPNIVELHEVMASKSKIYIAMELVRGGELFNKVAKGRLKEDLARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEDGNLKVSDFGLSTFSGQDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYRGDFKCPPWFSVEARRLVTKLLDPNPNNRITISKIMDSSWFKKPVPKSMMTARRKEEEAFDFEMKSNVPTTMNAFHIISLSEGFDLSPLFEEKKREEREELRFATAGTPSRVISRLEEVAKAVKFDVKSSDTKVRLQGQERGRKGKLAIAADIYAVTPSFMVVEVKKDNGDTLEYNQFCSKELRPALKDIFWTSSENSTPAA.	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g00961	458	Pfam	Protein kinase domain	46	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g00961	458	Pfam	NAF domain	325	384	IPR004041	GO:0007165
	Seca11g00961	458	CDD	CIPK_C	329	444	-	-
	Seca11g00961	458	MobiDBLite	consensus disorder prediction	1	38	-	-
	Seca11g00961	458	SUPERFAMILY	Protein kinase-like (PK-like)	43	308	IPR011009	-
	Seca11g00961	458	Gene3D	Transferase(Phosphotransferase) domain 1	128	324	-	-
	Seca11g00961	458	Gene3D	Kinase associated domain 1, KA1	325	449	-	-
	Seca11g00961	458	ProSiteProfiles	NAF domain profile.	323	347	IPR018451	GO:0007165
	Seca11g00961	458	ProSiteProfiles	Protein kinase domain profile.	46	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g00961	458	ProSitePatterns	Protein kinases ATP-binding region signature.	52	79	IPR017441	GO:0005524
	Seca11g00961	458	FunFam	Non-specific serine/threonine protein kinase	323	448	-	-
	Seca11g00961	458	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	37	445	-	-
	Seca11g00961	458	CDD	STKc_SnRK3	45	296	-	-
	Seca11g00961	458	SMART	serkin_6	46	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g00961	458	FunFam	Non-specific serine/threonine protein kinase	39	330	-	-
	Seca11g00961	458	FunFam	Non-specific serine/threonine protein kinase	37	125	-	-
	Seca11g00961	458	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	164	176	IPR008271	GO:0004672\|GO:0006468
	Seca11g00961	458	Gene3D	Phosphorylase Kinase; domain 1	43	127	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g00961	Seca-Chr11	9795252	9796708	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g00961	27	457	CBL-interacting serine-threonine protein kinases	AT4G30960	74.382	0.0	630

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Seca11g00961		Pkinase	6.4e-74	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g00961	-		K07198	var:108321114	727.243