Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00956 ATGCTCCGCAAATTGTTCTTTCGCAAGCCTCCTGATGGCCTCCTTGAGATCTGCGAGAGAGTTTACGTTTTTGATTGCTGCTTCACCACGGATGCTTGGAATGAAGAGAATTACAAAGTGTACATGGATGGAATAGTTGGTCAACTTAGAGAGAACTTGCCTGATGCTTCCATTCTGGTTTTCAATTTCCGTGAGGATCAGACCAAGAGTCTGATGGCAAACGTCTTGTCTGAGTATGACATTACTATAATGGACTATCCCAGGCACTATGAAGGTGTCCCCGTTCTCAAAATGGAGCTCATACACCACTTTTTAAGGTCTGGTGAAAGTTGGCTCTCGCTTGGGCACCATAATGTGTTGTTGATGCATTGTGAACGTGGTGGTTGGCCTGTTTTGGCTTTCATGTTGGCTGCATTGTTGATTTACCGAAAGGTTTATACTGGGGAGCAGAGGACTTTGGATATGCTTTACAAACAGGCTCCGAACGAGCTTTTGCATTTGTTGACACCGTTGAATCCCATCCCTTCCCAATTGAGATATCTGCAGTATGTTTCCAGGAGGAATGTGGCCTTAGATTGGCCTCCACTGGACAGGGCACTCATGTTGGACTGCGTCATTCTCAGATTCATCCCAAATTTTGATGGGGAAGGTGGTTGTCATCCAGTGTTTAGAATTTTTGGACAGGATCCTTTTAGTGCAGATAAAAATCCTAAAATGCTGTACTCAATGCCAAAGAAAAGCAAAAATTTCCGGGCTTACAAGCAGGGAGAGTGTGAACTAATTAAAATTGATATCAATTGCCATATTCAAGGTGATGTCGTGATAGAGAGCATTAACTTAAATGGTGACATGGAACGTGAAATGATGATGTTCCGAGTCATGTTCAACACGGCTTTTGTTAGATCTAATATTCTGATGCTTAATCGGGATGAAATTGACATCTTATGGGATGCTAAAGACCACTTTCCAAGAGATTTCAGAGCTGAGATCCTTTTCTCAGAGATCGATGCTGCTGCAGCAGTTATTGCCAGTGGTACCTCCTCATGCTTTGAGGAGAAGGAGGGACTGCCCATGGAAGCATTTGCCAAGGTTCAAGAGATCTTCAGCCATGTGGACTGGTTGAACCCCGGGGCAGATGCTGCACTAAATGTGCTTCAACAGATAAGTGCTTCGGCTATCATGAACGACAAGTTGGATACAGTTTCTGATCAGTATGTGGAAACTGGCACTTCATTGCATGAAACAGGTCCTAAAATGTCTCACGGGAATTCAAATGAAGCACTACAGTCTTTGTCCTCAACTAAGCGATCTCCAAATAATGATACAAGTAGAAAAGAAGATAAGACAAAAAAGATTGATGCTACTCCAAAGCGGTATTTGGAAACTGGCACTTCATTGCATGAAACAGGTCCTAAAATGTCTCAGGGGAATTCAAATGAAACAATACAGTCTTTGTCCTCAACCAAGCGATCCCCAAATAATGATACGGGTAGAAAAGAGGATAAGACAAACAAGGTTGATGCTAATCCACAGCTGCATGTGGAAACTGGCACTTCATTGCATGAAACAGGTCCTAAAATGTCTCAGGGGAGTTCAAATGAAGCAATACAGTCTCTGTCCTCAACTAAGCGATCCCCAAATAGTGATATGAATAGAAAAGAGGATAAGACCAAAAAGGTTGATGCTACTCCACAGCAGTATTTGGAAACTGGCACTTCATTGCATGAAGCAGGTCCTAAAGTGTCTCAAGGGAATTCAAATGAATCAATACAATCTTTGTCCTCAGCCAGGCGATCCCCAAATAATGATACGAGTAGAAAAGAAGATAAGACAAACAAGGTTGATGCTACTCCACAAAGATACATGGAAACTGGTGCTTCATTGCATAATACAGGTCCTAAAATGTCTCAGAGGAATTCAAATGAATCAATACAATCTTTGTCCTCAACCAAGCGAACACCAAATAATGATACGAGTAGAAAAGAGGATAAGACAAACAAGGTTGATGCTACACCACAGCTGTATGTCCAAACTGGCACTTCATTGCATGAAACAGGTCCTAAAATGTCTCAGGGGAGTTCAAATGAAGCAATACAGTCTCTGTCCTCAACTACGCGATCCCCAAGTAATGATATGAATAGAAAAGAAGATAAGACCAAAAAGGTTGATGCTACTCCACTGCAGTATGTGGAAACTGACACTTCATTAAATGAAACAGGTCCTAAAATGTCTCAAGGGAATTCAAATGAAGCAATACAGTCTTTATCCTCAACTAAGCAATCCCAAAATAGTGATACGAATAGAAAAGAGAATAAGATAAACAAGGCTGATGCTACTCCACAGCAACCCAGCTTATCTGAGAGAACCTTGGAATCCAGTAAATGTCCAACAGAGTCGACAGTTCTAGACATAAAACTGCAGGTGTCTGATCTTGCCTCATCTGGTTCTGTGGATTCCTCTCTTTCCCCTGGAACACCGCCTCTGCGGCCTCCCTCAACTAATCGTGCTAAAGAAGTTCATGATTCTCCTCCCCACTCGGAATCACCTCCTCATAGTATTTTGCCTTCACAATCAAGACAACAATCACAAGACAAAAGTCATTCACCTATTTCTAGCTTTACACTTGGGACCCGATTGTCATCTGGTTCTACTCATAGTAAGTCACCAGCTGACGCCACTTCCCATCCGTCAGTTTCATCAGCTACTTCAATCCAGTCATCCCCTTCACTTTCTTCCAAAGCACCCACGAATGAGATTCCATCTGTTAGAACAAGACTTGAGTCTTCCCCTTCACAACCTCCAACTCCACCACCTCCTCCTACCCCTCCACTAAAAGATCATAAACCAGTTAGAACTGGACCTCCACCTCCACCACCTCTCCCGAAGAAAGAACCACATGTAGCTGGACCTGTTCCTCCTCCTCCTCCTCTGCCATCTCCTATGAATGAGGAGCCATGTGTTAGAAATGGACCCCCTCCTCCCCCTCCACCTCCTCTAAAAGAGGAGCAACCTGTTACATTTAAGCCCCCACCACCTCCCCCACCTCCTCGTCTTTCTGGGGAAGCTGCAGGTCCTACTATAGCACCACCACCACCGCCGCCACCACCACTTTCAACTGCAGCAGCTTCCTCTGACCACCCTAATCTGTCATTACAAAAATCTTCTGCTCCTGCAGCACCTGCTGCTCCACCACCTCCAATGCTATTTGATAAAGGAGGTCTAAAACCAGGTGGTGCTTTTCCAAGGTCTCTTCTTGGGGGTAGTGATGGAAATAATGTGTCTGGCACAACAGGACCTCGATCTAGTTCACCTACCGGCTCAAAGGGACGACTTCTATCACGTACGATTGGCTCAAAGAACAACACCAAAAAGTTGAAGCCATTGCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCTGAGACACAGAAATCTGGTGAAGCTTCCAAGGCCCCAGAGATTGATATGACTGAGCTTGAGAATCTCTTCTCAGCAGCAGTCCCAAGTTCAGGTCCTGCAAAGAAGTCAAATGCCCAAAACTCAGTCAAGCCTAAATGTGATAAAGTGCAACTGGTTGAGCATAGGCGAGCATATAATTGTGAAATCATGCTTTCACAAGTCAAGGTGCCATTGCATGATTTAATGAGCTCAGTGCTAGCACTGGAAGATTCAGCGCTAGACACTGATCAGGTTGAAAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAAGTAATCAAGGGCTATAACGGGGAAAAAGATAAGTTAGGGAGATGTGAACAGTTCTTCATGGAGTTGATGAAAGTACCACGAGTAGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAGTTCCAGTCTCAGGTTTCTGATCTTAGAAATAGCCTTAATGTTATCAGGAATTCTGTCAAATTGAAGAGAGTTATGCAAACAATACTTTCTCTAGGAAATGCTTTGAACCAAGGAACTACCAGGGGTTCTGCTATTGGATTCAGATTAGATAGCCTTCTTAAACTGACCGAAACACGTGCACGGAATAACAAGATGACTCTCATGCATTATCTTTGTAAGGTGCTAGCTGACAAATTACCAGAAGTTTTAGATTTCTCCAAGGATCTTGCTAATCTAGAGCCAGCAGCTAAGATCCAACTGAAGTTTCTGGCAGAAGAGATGCAAGCTATAAACAAAGGATTAGAGAAAGTTGTGCAGGAATTATCAACCTCTGAAAATGATGGTCCGATATCAGAAACTTTCCGCAAGAAATTGAAAGAGTTCCTCTGTTCTGCTGAAGCTGAAGTCCGTTCATTGGCTTCACTATATTCTGGCGTGGGTAGGAAAGTGGATGCATTGATTCTTTATTTTGGTGAAGATCCATCTCGCTGCCCATTTGAGCAAGTTGTGACAACTTTGTTGAACTTCACTAGAATGTTCAACAAATCCCATGAAGAAAACTGCAAGCAGCTAGAGCTTGAAATGAAGAAAACAGCAGAAAGTGAGAAAAAGAAATGTGAATCAGAAAGGATATTACCTAGGGCAATCCGGACTGGCAATGTCAAATAG 4572 0.4313 MLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWNEENYKVYMDGIVGQLRENLPDASILVFNFREDQTKSLMANVLSEYDITIMDYPRHYEGVPVLKMELIHHFLRSGESWLSLGHHNVLLMHCERGGWPVLAFMLAALLIYRKVYTGEQRTLDMLYKQAPNELLHLLTPLNPIPSQLRYLQYVSRRNVALDWPPLDRALMLDCVILRFIPNFDGEGGCHPVFRIFGQDPFSADKNPKMLYSMPKKSKNFRAYKQGECELIKIDINCHIQGDVVIESINLNGDMEREMMMFRVMFNTAFVRSNILMLNRDEIDILWDAKDHFPRDFRAEILFSEIDAAAAVIASGTSSCFEEKEGLPMEAFAKVQEIFSHVDWLNPGADAALNVLQQISASAIMNDKLDTVSDQYVETGTSLHETGPKMSHGNSNEALQSLSSTKRSPNNDTSRKEDKTKKIDATPKRYLETGTSLHETGPKMSQGNSNETIQSLSSTKRSPNNDTGRKEDKTNKVDANPQLHVETGTSLHETGPKMSQGSSNEAIQSLSSTKRSPNSDMNRKEDKTKKVDATPQQYLETGTSLHEAGPKVSQGNSNESIQSLSSARRSPNNDTSRKEDKTNKVDATPQRYMETGASLHNTGPKMSQRNSNESIQSLSSTKRTPNNDTSRKEDKTNKVDATPQLYVQTGTSLHETGPKMSQGSSNEAIQSLSSTTRSPSNDMNRKEDKTKKVDATPLQYVETDTSLNETGPKMSQGNSNEAIQSLSSTKQSQNSDTNRKENKINKADATPQQPSLSERTLESSKCPTESTVLDIKLQVSDLASSGSVDSSLSPGTPPLRPPSTNRAKEVHDSPPHSESPPHSILPSQSRQQSQDKSHSPISSFTLGTRLSSGSTHSKSPADATSHPSVSSATSIQSSPSLSSKAPTNEIPSVRTRLESSPSQPPTPPPPPTPPLKDHKPVRTGPPPPPPLPKKEPHVAGPVPPPPPLPSPMNEEPCVRNGPPPPPPPPLKEEQPVTFKPPPPPPPPRLSGEAAGPTIAPPPPPPPPLSTAAASSDHPNLSLQKSSAPAAPAAPPPPMLFDKGGLKPGGAFPRSLLGGSDGNNVSGTTGPRSSSPTGSKGRLLSRTIGSKNNTKKLKPLHWLKLSRAVQGSLWAETQKSGEASKAPEIDMTELENLFSAAVPSSGPAKKSNAQNSVKPKCDKVQLVEHRRAYNCEIMLSQVKVPLHDLMSSVLALEDSALDTDQVENLIKFCPTKEEMEVIKGYNGEKDKLGRCEQFFMELMKVPRVESKLRVFSFKIQFQSQVSDLRNSLNVIRNSVKLKRVMQTILSLGNALNQGTTRGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKVLADKLPEVLDFSKDLANLEPAAKIQLKFLAEEMQAINKGLEKVVQELSTSENDGPISETFRKKLKEFLCSAEAEVRSLASLYSGVGRKVDALILYFGEDPSRCPFEQVVTTLLNFTRMFNKSHEENCKQLELEMKKTAESEKKKCESERILPRAIRTGNVK. 1524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00956 1523 Gene3D - 197 337 - -
Seca11g00956 1523 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 335 IPR035892 -
Seca11g00956 1523 Gene3D Protein tyrosine phosphatase superfamily 13 196 IPR029021 -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 1087 1120 - -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 623 654 - -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 493 508 - -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 814 1120 - -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 776 798 - -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 467 492 - -
Seca11g00956 1523 SMART it6_source 463 1523 IPR015425 -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 728 764 - -
Seca11g00956 1523 Coils Coil 1482 1502 - -
Seca11g00956 1523 Pfam Formin Homology 2 Domain 1120 1481 IPR015425 -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 547 562 - -
Seca11g00956 1523 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1115 1507 IPR015425 -
Seca11g00956 1523 Coils Coil 1388 1408 - -
Seca11g00956 1523 PANTHER FORMIN-J 991 1508 - -
Seca11g00956 1523 SMART PTEN_C2_2 195 334 IPR014020 -
Seca11g00956 1523 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 11 185 IPR029021 -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 930 1040 - -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 670 709 - -
Seca11g00956 1523 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1128 1498 - -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 601 616 - -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 439 457 - -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 710 724 - -
Seca11g00956 1523 Gene3D Formin, FH2 domain 1116 1492 IPR042201 -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 509 546 - -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 1041 1055 - -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 411 798 - -
Seca11g00956 1523 ProSiteProfiles C2 tensin-type domain profile. 197 335 IPR014020 -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 851 929 - -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 563 600 - -
Seca11g00956 1523 MobiDBLite consensus disorder prediction 411 438 - -
Seca11g00956 1523 Pfam C2 domain of PTEN tumour-suppressor protein 198 334 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00956 Seca-Chr11 9746099 9757640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00956 1 494 Protein tyrosine phosphatase (PTP) family AT5G58160 58.008 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00956 - - mdm:103424784 1354.35