Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00949 ATGGGTTTGGGAGTATTTGGATCTGTTCTGGTTTTGACACTCTTGTTCAAGCACTTAGCCTCTCAGCAACCAAATACTGATGAGTTCTTTGTGTCTGAGTTCTTGAAGAAGATGGGTGTAACATCTTCTCAAGCCTACAACTTTTCTGGTTCTGTTTGTTCATGGCAAGGGGTTTCCTGTGATGTCAATAGAGAACATGTTGTTGACTTGATGCTTTCTGGTATTGGCCTTTCTGGTCCTATTCCTGATACCACCATAGGAAAGCTCACCAAACTTCAAACTTTGGATCTTAGCCACAACAACATCACTGGCTTGCCTTCAGATTTCTGGAGTTTAAGCTCTCTCAAGAGCCTTAACCTCTCCTCCAATCAGATTTCTGGTTCATTGACTAACAACATTGGCAACTTTGGTTTGCTAGAAAACTTTGACTTGTCCAGCAACAATTTCTCTGAGGAAATTCCTGAAGCTATGAGCTCCCTTGTGAGTCTGAGGGTCCTCAAACTTGACCACAACAGGTTTGCTCAGAGCATACCTTCTGGGATTCTCAAGTGCCAGTCCCTAGTTTCAATTGATCTTTCATCAAATCAGCTGAATGGAACACTTCCTGATGGTTTTGGTGCTGCTTTCCCTAAGCTTAAGACCTTGAACCTTGCTGGGAATAACATCTATGGTCGTATTTCTGATATTTCTGGCTTAAAGTCCATTGTGAGTCTCAACTTATCAAGCAATTCATTTCAGGGTTCTGTCATGGGTGTGTTTCAGGAAAGGTTGGAGGTCTTGGACCTTAGCAGAAACCAATTTCAAGGTCACATTCCTCAGGTACAGTACACCTCTAATTACAATTGGTCTCATTTAGTGTATCTGGATTTGTCAGAGAATCAGCTTAGTGGGGAAATTTTCCAAAATTTGAATGAGTCCTTGAATCTAAAGCACCTTAATCTAGCACACAATAGATTTATCAGACAGAAATTCCCACAGATTGAAATGCTTCTAGGATTGGAATATCTGAACTTGTCAAAAACTAGTCTTGTTGGTCACATTCCTTATGAAATCTCAAAGTTGATTAATTTGAATGCACTTGATATTTCTATGAATCATCTTGATGGGAGAATTCCCTTACTGAGGAATAAACACCTCCAAATTCTTGACCTTTCATACAACAATTTGAGTGGAGCAGTCCCTCCATCTGTCTTGAAGAAACTCCCTTGGATGGAGAAATACAACTTCTCTTACAATAACTTAACCCTTTGTGCTTCAGATATCAAACCTGATATCTTGCAAACAGCATTCTTTGGGTCAGTGAACAGTTGCCCACTTGCTGCAGACCCACACCTTTTCAAAAGAAGAGACACTGGACATAAGGGAATGAAGCTGGCTCTAGTATTGACCTTCTCAATGATTTTTATACTTGCTGGGCTTTTGTTTCTAGCATTTGGTTGCAGAAGGAAAACAAAAATGTGGGAAGTTAAGCAAAGTTCATACAAAGAAGAACAGAACATTTCAGGTCCCTTTTCCTTCCAAACAGATTCAACAACTTGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGTTGAATATTACATTTGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCTGAAGGAAAATTTGGACCTGTCTATAGAGGCTTTCTACCTGGAGGTATTCATGTAGCAGTTAAAGTCTTGGTTGTTGGGTCTACATTGACAGATGAAGAAGCTGCAAGAGAGCTTGAGTTTCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTTTAACTGGATATTGTGTAGCTGGGGATCAAAGGATTGCCATATATGATTACATGGAAAATGGGAACTTGCAAAATCTGCTTTATGACTTGCCACTTGGAGTGCACAGCACAGATGACTGGAGCACAGACACATGGGAAGAAGCTGACAATAATGGGATTCAAAATGTTGGTTCTGAAGGGTTACTCACAAGTTGGAGATTTCGCCACAAGATTGCCCTTGGCACTGCAAGAGCATTGGCATTTCTACATCATGGATGCTCACCTCCAATAATTCACAGAGCTGTTAAAGCTAGCAGTGTTTATTTGGACTATGACTTGGAACCAAGGTTGTCTGATTTTGGGTTGGCTAAGATTTTTGGAAATGGATTGGATGATGAGATTGCAAGTGGTTCACCTGGTTATGTTCCACCAGAGTTTTCTCAACCAGATTTTGACACCCCAACAACAAAATCTGATGTGTACTGTTTTGGGGTTGTTCTCTTTGAGCTACTAACTGGAAAGAAGCCAGTGGAAGATGATTACCCTGATGATAAAGATGCAATCTTGGTAAGTTGGGTCAGAGGATTGGTAAGGAAAAACCAAGCTTCAAGAGCTATTGATCCTAAAATCCGTGATACAGGACCAGATGAACAAATGGAAGAGGCTCTTAAGATTGGTCATCTATGCACTGCTGACTTACCCTCCAAGCGACCAACCATGCAGCAGATAGTTGGACTTCTAAAGGACATTGAGCCTACAGCTAGTTAG 2562 0.4102 MGLGVFGSVLVLTLLFKHLASQQPNTDEFFVSEFLKKMGVTSSQAYNFSGSVCSWQGVSCDVNREHVVDLMLSGIGLSGPIPDTTIGKLTKLQTLDLSHNNITGLPSDFWSLSSLKSLNLSSNQISGSLTNNIGNFGLLENFDLSSNNFSEEIPEAMSSLVSLRVLKLDHNRFAQSIPSGILKCQSLVSIDLSSNQLNGTLPDGFGAAFPKLKTLNLAGNNIYGRISDISGLKSIVSLNLSSNSFQGSVMGVFQERLEVLDLSRNQFQGHIPQVQYTSNYNWSHLVYLDLSENQLSGEIFQNLNESLNLKHLNLAHNRFIRQKFPQIEMLLGLEYLNLSKTSLVGHIPYEISKLINLNALDISMNHLDGRIPLLRNKHLQILDLSYNNLSGAVPPSVLKKLPWMEKYNFSYNNLTLCASDIKPDILQTAFFGSVNSCPLAADPHLFKRRDTGHKGMKLALVLTFSMIFILAGLLFLAFGCRRKTKMWEVKQSSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVHSTDDWSTDTWEEADNNGIQNVGSEGLLTSWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGNGLDDEIASGSPGYVPPEFSQPDFDTPTTKSDVYCFGVVLFELLTGKKPVEDDYPDDKDAILVSWVRGLVRKNQASRAIDPKIRDTGPDEQMEEALKIGHLCTADLPSKRPTMQQIVGLLKDIEPTAS. 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00949 853 ProSiteProfiles Leucine-rich repeat profile. 211 233 IPR001611 GO:0005515
Seca11g00949 853 SMART LRR_typ_2 232 255 IPR003591 -
Seca11g00949 853 SMART LRR_typ_2 377 400 IPR003591 -
Seca11g00949 853 SMART LRR_typ_2 89 111 IPR003591 -
Seca11g00949 853 SMART LRR_typ_2 112 136 IPR003591 -
Seca11g00949 853 SMART LRR_typ_2 160 184 IPR003591 -
Seca11g00949 853 Gene3D Ribonuclease Inhibitor 30 178 IPR032675 -
Seca11g00949 853 ProSiteProfiles Protein kinase domain profile. 547 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00949 853 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Seca11g00949 853 Gene3D Ribonuclease Inhibitor 179 279 IPR032675 -
Seca11g00949 853 Gene3D Ribonuclease Inhibitor 280 375 IPR032675 -
Seca11g00949 853 Gene3D Transferase(Phosphotransferase) domain 1 623 852 - -
Seca11g00949 853 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 280 848 - -
Seca11g00949 853 FunFam Nuclear pore complex protein NUP107 28 179 - -
Seca11g00949 853 Gene3D Ribonuclease Inhibitor 376 422 IPR032675 -
Seca11g00949 853 Pfam Leucine Rich repeat 376 391 IPR001611 GO:0005515
Seca11g00949 853 Pfam Leucine Rich repeat 283 298 IPR001611 GO:0005515
Seca11g00949 853 Pfam Protein tyrosine and serine/threonine kinase 551 844 IPR001245 GO:0004672|GO:0006468
Seca11g00949 853 FunFam Calmodulin-binding receptor kinase CaMRLK 255 373 - -
Seca11g00949 853 SUPERFAMILY Protein kinase-like (PK-like) 533 845 IPR011009 -
Seca11g00949 853 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
Seca11g00949 853 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Seca11g00949 853 PRINTS Leucine-rich repeat signature 92 105 - -
Seca11g00949 853 PRINTS Leucine-rich repeat signature 112 125 - -
Seca11g00949 853 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Seca11g00949 853 Pfam Leucine rich repeat 186 244 IPR001611 GO:0005515
Seca11g00949 853 SUPERFAMILY L domain-like 46 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00949 Seca-Chr11 9692442 9695003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00949 39 848 Receptor kinase-like Gene Family AT5G07280 32.641 8.46e-113 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Seca11g00949 PK_Tyr_Ser-Thr 1.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00949 - - gmx:100797738 1503.03