Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00948 ATGTCGGACGAAGAGCACCACTTCGATTCTCAGGCGGACGCTGGAGCGTCGAAGACTTATCCTCAGCAAGCTGGTACCATTCGCAAGAATGGCTACATCGTCATCAAGTCCAGGCCTTGCAAGGTTGTTGAAGTTTCTACCTCCAAAACAGGAAAGCATGGACATGCAAAGTGCCACTTTGTTGCAATTGATATTTTCAATGGGAAAAAGCTTGAGGATATTGTTCCTTCATCCCACAACTGTGATGTTCCGCATGTGACACGCACTGACTATCAGCTGATTGATATATCTGAAGATGGTTTTGTAAGTTGTCTTTTACTTCCGACACTGGAGGTGTCATGA 342 0.4532 MSDEEHHFDSQADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSCLLLPTLEVS. 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00948 113 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Seca11g00948 113 NCBIfam translation initiation factor IF-5A 17 107 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Seca11g00948 113 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Seca11g00948 113 PIRSF Transl_init_eIF5A 1 112 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Seca11g00948 113 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Seca11g00948 113 Gene3D - 86 109 IPR012340 -
Seca11g00948 113 Gene3D - 1 85 IPR014722 -
Seca11g00948 113 MobiDBLite consensus disorder prediction 1 23 - -
Seca11g00948 113 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 105 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00948 Seca-Chr11 9685355 9688382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00948 1 105 Eukaryotic Initiation Factors Gene Family AT1G13950 91.429 3.73e-68 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00948 K03263 K02180 gmx:100305510 214.157