Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00947 ATGTCATTTCATGCTCAGGACACAGTTGAACCTCCTGAAAAGGAAATTATTGCAAGAGAAGCTGAAGCAGCACATGCACCTCCAACTCAGCTTCAGGTGTCTATGTCTTCAACTCCGTCGTCTGAATTATCTCCAAATTCTGTTACACAATCTTTATCACCCGTCCCTAGTCCAACTATACAAAAACAGAAAATGTCTCCTCCAAAGGTTAATAATATGCATGCGGCAGTAGTAGAAAAAAAAACTCCTTCTGGTGGTAAAACCTTATCTGCAATTTCTGTTGCAAGGACATCAGCATCTGATGGATACAACTGGAGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACTCATTCAAACTGTAGTGCTAAGAAGATTGAATGCTGTGATCATTCAGGTCATGTGATAGAGATTGTTCATAAAAGTGAACACAGTCATGATCCCCCACGGAAGACTAATTCCATTAGGGAAAGTAAGGTTGTGTCTTCCAATGAACCTTCTGTAAAGAACAGTGTTCCTGAGCAGCATACCAGAGTTATGAAGGATTCTGATCCGTCCATTTCTTCAAAAGCTCTACAAGAAGTACCTTGCATTGCTGAAAAGAAACAACAAAACTCGTCTAATATCAGTGATAATGGGAAAATTATTTTGAAGGAGGATCTTGTAAATGAACCAGAGCCAAAAAAAAGGCAAGTTTGCATTTTGATATCCAGAATGAAGAAAGGTGACTTAACAAACTTGGATTCTCCCGTAAAACCTGGAAAGAAACCCAATCTTGTTGTACATGCAGCAGGGGATGTGGGAATATCAGGCGATGGATACCGATGGCGCAAGTATGGACAGAAAATGGTGAAGGGGAATCAACATCCCAGAAACTACTACAGATGCACTTCTGCTGGATGTCCTGTCCGAAAGCACATTGAGAATGCTGTAGATAACTCAAATGCTGTCACTATAACATACAAGGGTGTACATGACCATGACATGCCTGTGCCCAAGAAACGACATGGCCCACCAAGTGCTCCTCTTGTGGCTGCTGCAGCACCTGCCGCCATGAACAATTTGCAGTTGAAGAAACCCGACTCGCCACAAAACCTGAAAAATTCTACTCAATGGTCAGTGGACACGGAAGGAGAGCTAACTGGGGAGGCCATGGACCTTGGGGGTGAGAAAGCAATGGAGTCAGCACGAACACTATTGAGCATAGGGTTTGAAATTAAGCCTTGCTGA 1257 0.4288 MSFHAQDTVEPPEKEIIAREAEAAHAPPTQLQVSMSSTPSSELSPNSVTQSLSPVPSPTIQKQKMSPPKVNNMHAAVVEKKTPSGGKTLSAISVARTSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSNCSAKKIECCDHSGHVIEIVHKSEHSHDPPRKTNSIRESKVVSSNEPSVKNSVPEQHTRVMKDSDPSISSKALQEVPCIAEKKQQNSSNISDNGKIILKEDLVNEPEPKKRQVCILISRMKKGDLTNLDSPVKPGKKPNLVVHAAGDVGISGDGYRWRKYGQKMVKGNQHPRNYYRCTSAGCPVRKHIENAVDNSNAVTITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPAAMNNLQLKKPDSPQNLKNSTQWSVDTEGELTGEAMDLGGEKAMESARTLLSIGFEIKPC. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00947 418 MobiDBLite consensus disorder prediction 1 69 - -
Seca11g00947 418 MobiDBLite consensus disorder prediction 149 163 - -
Seca11g00947 418 MobiDBLite consensus disorder prediction 149 195 - -
Seca11g00947 418 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 40 378 IPR044810 GO:0003700
Seca11g00947 418 Pfam WRKY DNA -binding domain 281 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g00947 418 Pfam WRKY DNA -binding domain 101 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g00947 418 SUPERFAMILY WRKY DNA-binding domain 96 158 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g00947 418 ProSiteProfiles WRKY domain profile. 94 158 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g00947 418 MobiDBLite consensus disorder prediction 164 183 - -
Seca11g00947 418 SUPERFAMILY WRKY DNA-binding domain 275 339 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g00947 418 Gene3D WRKY domain 264 340 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g00947 418 Gene3D WRKY domain 86 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g00947 418 SMART WRKY_cls 99 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g00947 418 SMART WRKY_cls 279 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g00947 418 MobiDBLite consensus disorder prediction 29 68 - -
Seca11g00947 418 ProSiteProfiles WRKY domain profile. 274 339 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g00947 418 FunFam WRKY transcription factor 267 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00947 Seca-Chr11 9673736 9677481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00947 34 418 WRKY Transcription Factor Family AT4G30935 54.476 3.41e-128 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca11g00947 WRKY 2.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00947 - - gmx:100782194 623.239