Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00940 ATGTTTGACAGTGGTCACAAATCAGAATACATGGGTGGCCAGCGGGAAAATTTTTTGAGGTTGGGTGTCATGGATTCTAGACTATCTTCATCTTCAGATGCTGGAGTTAAAAAATCTGGATTTGGTATTGATAAATTAAACCATGGTGATCCTGGAAGCAGCACAACCTCTAGGTCTTTTAAAAGAGGAATGATAAAGGGTTCTGAAGGACTGAAGTCAATTGGTAGATCACTTGGATTGGGGGTATCTAGGGCCGTGTTCCCAGAAGATCTTAAAGTGTCAGAAAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTGTGGAATAAGCTTTTTGTTATCTCATGCATTTTGGCTGTGTCTGTGGATCCATTGTTTTTTTATCTCCCTGTCATCAATGATCAATTACACTGTCTCAGCATAGACCGAAAGTTGGCAACTATAGTTACCACTGTAAGGACAGTCGTTGATGCTTTCTATCTTATACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCATCTCGTGTCTTTGGGCGGGGTGAGCTTGTGATAGATTCAGCACAGATAGCTAAGCGATACTTGCGGCGATATTTCATCATTGATTTCCTATCTGTGTTGCCGATACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAAGTTCAGATGTACTAACAACTAAGCAGGCCTTGCTGTTCATTATCTTGCTTCAGTATGTTCCTAGATTTCTCCGAATGGTACCATTGACTTCAGAACTCAAGAGAACAGCAGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCATATTATTTGCTGTTATACATGCTTGCTAGTCATCATAATGGTACATCAACTTTACCAATAATTTATTTTGGGTCTTTTTCCATCAATGATTATTTGCAGATAGTTGGTGCGTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGGAGGCTTGCAGTGAGAATGGGTGCAATAAAAACTTCCTGTATTGTGGCAACCGCTACACAGAAGGTTATAGTGCCTGGCAGAATAGAAGTAAAGATATTCTTAAGTCAAAGTGCTCTGCAGATGATGATCCTCCACCTTTTGATTATGGTATTTTTTCACAAGCTTTGACATCTGGTATTGTTTCATCTAAAAAGTTCTTCTCCAAGTACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGGCTTCAAACTAGCACATACCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATATTTGGCCTCATCCTCTTTGCACTTCTAATTGGCAATATGCAGACATATCTTCAGTCTCTTACCATTAGGCTCGAGGAGATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAACTTAGAGGGCGTGTGAGACGGTATGATCAATACAAGTGGTTAGCAACGCGTGGTGTAGATGAAGAAAGTTTAGTTCAGAGTCTACCAAAGGATCTTCGAAGAGATATTAAACGTCATCTCTGTTTGGCATTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGCGAGAGACTGAAACCGTGTTTATTTACAGAGAATACTTACCTTGTCCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGTGGTCGCCTTGAGAGTGTTACGACAGATGGAGGGAGGAGTGGATTTTTCAACCGTAGTTTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTGGACCCCAGATCTGGTTCTAATCTCCCATCTTCTACTCGAACAGTTAAGGCATTAACAGAGGTTGAGGCTTTTGCCTTAACAGCTGATGAGTTAAAATTTGTCGCGAGTCAGTTTAGGCGCCTTCACAGTAGACAAGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGATATTGTAAAAAGAAGATTATGAAGCTTCGTCAAAAGGAAGAAGCTGATGAGTCAGAAGGAACTCAAGACAATGCTGGTGGCAGTTCCTACAGCCTTGGTGCCGCCTTGTTAGCCTCTAAGTTTGCTGCACACACTCTCCGTGGTGTACATCGTAATCGACTTGCTAAGACTGCCAGGGAGTTGGTGAAACTACAGAAACCCCCTGAGCCTGACTTTACTGCAGATGATGTAACTACTCTCTTGAAATACTTGTTTTCATTGACATTATTATTGAACTTGTGA 2310 0.4216 MFDSGHKSEYMGGQRENFLRLGVMDSRLSSSSDAGVKKSGFGIDKLNHGDPGSSTTSRSFKRGMIKGSEGLKSIGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSVDPLFFYLPVINDQLHCLSIDRKLATIVTTVRTVVDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLRRYFIIDFLSVLPIPQIVVWRFLQRSKSSDVLTTKQALLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHHNGTSTLPIIYFGSFSINDYLQIVGAFWYLLAIERNDSCWQEACSENGCNKNFLYCGNRYTEGYSAWQNRSKDILKSKCSADDDPPPFDYGIFSQALTSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRGRVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPRSGSNLPSSTRTVKALTEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKKKIMKLRQKEEADESEGTQDNAGGSSYSLGAALLASKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFTADDVTTLLKYLFSLTLLLNL. 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00940 769 FunFam Cyclic nucleotide-gated ion channel 1 525 643 - -
Seca11g00940 769 Pfam Cyclic nucleotide-binding domain 548 638 IPR000595 -
Seca11g00940 769 Pfam Ion transport protein 308 453 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca11g00940 769 Pfam Ion transport protein 108 285 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca11g00940 769 CDD CAP_ED 527 658 IPR000595 -
Seca11g00940 769 SMART cnmp_10 527 658 IPR000595 -
Seca11g00940 769 Gene3D Helix hairpin bin 455 518 - -
Seca11g00940 769 SUPERFAMILY cAMP-binding domain-like 456 647 IPR018490 -
Seca11g00940 769 Gene3D Jelly Rolls 525 645 IPR014710 -
Seca11g00940 769 ProSiteProfiles cAMP/cGMP binding motif profile. 527 611 IPR000595 -
Seca11g00940 769 SUPERFAMILY Voltage-gated potassium channels 100 449 - -
Seca11g00940 769 FunFam Cyclic nucleotide-gated ion channel 1 454 518 - -
Seca11g00940 769 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 308 748 - -
Seca11g00940 769 Gene3D - 111 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00940 Seca-Chr11 9630413 9637932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00940 1 752 Ion Channels AT2G23980 73.575 0.0 1136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00940 K05391 - gmx:100784327 1280.77