Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00935 ATGGAGTTCAAGTATCGTGCTAACGATAACAGACCAACAACACCAATGACCACTTCGCCTCCTATCTCAACAGTCACCTACATCACCGAACCAGCGTTGCGAGGGGCAGGTGGTTTTGCGAGCATGTTTCCATCGCAGAACGTTTTCCGAATGCCGGTGGGGAACGGTGCCAGCGAAGCATTACGGAGAGAGCTGGAGAAGGAGCAAATTCGGCGGGAGATAATCGCCGGCGAGATTTTGCGGCGGAGAGAGCTTGAGGAGGAAGTGAGGAGGGAGCTGGCGTTGGAGAGAGAATTGGGGTTACAAATGCAGAGAAGTTTGATAACGCCAACACCACAGGGATTCTCCTTTCAGGAGGAGCGAATGCCAATGAGCAGAGTGAACTCAATTGATGAAATAATTGCTGTGCCACTACCGCAGCAACTGCCGCAGATTATGGCCCCTCCTGAAATCAACCCTTCTCCAAAAGATCAAGTTATCATACTCGCTAAGCCAGACCCTGATCAATATGATTCAAAGAAGAAAGAAGCGACGCCCACTGTTTATGGCAGCATGCAGTCTCCACTTGCTTTGAAGAAAAAACCCAAGGAGGAGTGGAGTTGCTCACTATGTCAGATTAGTGCCACAAATGAGAAAGGCTTGAATGAGCATTTTCTTGGTAAGAAGCACAAGGCCAAGGAAGCTGCATTGAGCACTCAGAAGATTGGGTTGGATGCAAAAGCAGATAGCCAGTCACTTGAAGGGTCAAAGGAATCGAAAACTGAGGAGCTGAAAAGCGGCGATTTGGAGAACAAAAATGAGACAGCAACTGAGGAAGCAGGGAAAACAAATGCATTGAAGAGGAAGAAGGTTGACTTTTGGTGTGAAGTTTGTCAAATTGGTACTTGGTCACAGATTGTGATGGAAAGCCATAAGAGAGGGAAAAAACACCTGAGGCGAATGATGACATTTGATGGAAACAATGTCAATGGGAGTGCCCTGCTCACTTCCACTGCATCAAAGGCTCCTGTGCTGGTCAAAGATACAGATGATTCTGTGAAAAGTGCAACAACACCTGTTGTGAATGAAGAAACAGACCTAAAGGTGGCAGAGAATATTGCAGATTCAGATGAAGTTCATCCAGTGGCTGAATCAGGAGGAGATGTAATGGTTGAAGAAGGACTATGA 1167 0.4687 MEFKYRANDNRPTTPMTTSPPISTVTYITEPALRGAGGFASMFPSQNVFRMPVGNGASEALRRELEKEQIRREIIAGEILRRRELEEEVRRELALERELGLQMQRSLITPTPQGFSFQEERMPMSRVNSIDEIIAVPLPQQLPQIMAPPEINPSPKDQVIILAKPDPDQYDSKKKEATPTVYGSMQSPLALKKKPKEEWSCSLCQISATNEKGLNEHFLGKKHKAKEAALSTQKIGLDAKADSQSLEGSKESKTEELKSGDLENKNETATEEAGKTNALKRKKVDFWCEVCQIGTWSQIVMESHKRGKKHLRRMMTFDGNNVNGSALLTSTASKAPVLVKDTDDSVKSATTPVVNEETDLKVAENIADSDEVHPVAESGGDVMVEEGL. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00935 388 MobiDBLite consensus disorder prediction 1 21 - -
Seca11g00935 388 Gene3D Classic Zinc Finger 190 236 - -
Seca11g00935 388 Pfam Zinc-finger of C2H2 type 286 310 - -
Seca11g00935 388 Pfam Zinc-finger of C2H2 type 199 223 - -
Seca11g00935 388 SUPERFAMILY beta-beta-alpha zinc fingers 276 314 IPR036236 -
Seca11g00935 388 SMART c2h2final6 199 223 IPR013087 -
Seca11g00935 388 SMART c2h2final6 286 310 IPR013087 -
Seca11g00935 388 SMART ZnF_U1_5 196 230 IPR003604 GO:0003676|GO:0008270
Seca11g00935 388 SMART ZnF_U1_5 283 317 IPR003604 GO:0003676|GO:0008270
Seca11g00935 388 MobiDBLite consensus disorder prediction 244 273 - -
Seca11g00935 388 SUPERFAMILY beta-beta-alpha zinc fingers 177 231 IPR036236 -
Seca11g00935 388 Gene3D Classic Zinc Finger 262 316 - -
Seca11g00935 388 PANTHER OS06G0651300 PROTEIN-RELATED 1 323 - -
Seca11g00935 388 MobiDBLite consensus disorder prediction 237 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00935 Seca-Chr11 9605597 9608905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00935 201 310 C2H2 Transcription Factor Family AT5G61190 32.727 1.08e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00935 - - aprc:113874763 295.049