Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00912 ATGTACCAGAACGAACTGAAGGAAATGGAGGGTCAATCAAGGGAGGAGTATATTGGATCACTTAGGAGGAAAAGCAGTGGTTTTTCTCGGGGAGTTTCTAAATACAGAGGCGTTGCCAGTTGCTTTTCAATGATCAGACATCATCATAACGGAAGGTGGGAGGCTCGGATTGGCAAGGTTTTTGGCAATAAATATCTTTATCTTGGAACTTATGCTACGCAGGAAGAAGCTGCCACAGCCTATGACATGGCAGCTATTGAATATCGAGGACTCAATGCTGTCACCAATTTTGATCTCAGCCGTTATACTAAGTGGCTTAAGCCCAACAATAACATCATTAATAATGATAATAACAAGACTAATATTAATCTTGTTGACGTTAACCCTAATTGTAATACCAACTTCGGCCCAAACACTAATCAAGAACTGGAGATTAGCTACTTACACAATTGTAAATTACTCAATAATACAAGAGATGATGCCACGTTGGTTCAGCCTCCGCCAGCTGGTGCCACGTCAGCCTTGGATCTTCTGCTTCAGTCATCCAAGTTTAAAGAATTGGTGGAAATGACGTCATCTGTGACCAATCTGTCAACACCGTTGGAATCACACTGCACATTTCCTGATGACATTCAAACGTACTTTGAATATGAAGATTCAAATAGATATGAACGAGGGGATGATGTCAATGTTATGTTCAACGAGCTCAACTCCATTGTGCCTATGTTCCGTTGCAATGACTTCAGCTGA 750 0.412 MYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVASCFSMIRHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYTKWLKPNNNIINNDNNKTNINLVDVNPNCNTNFGPNTNQELEISYLHNCKLLNNTRDDATLVQPPPAGATSALDLLLQSSKFKELVEMTSSVTNLSTPLESHCTFPDDIQTYFEYEDSNRYERGDDVNVMFNELNSIVPMFRCNDFS. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00912 249 Gene3D AP2/ERF domain 33 100 IPR036955 GO:0003700|GO:0006355
Seca11g00912 249 SMART rav1_2 34 104 IPR001471 GO:0003700|GO:0006355
Seca11g00912 249 CDD AP2 33 100 IPR001471 GO:0003700|GO:0006355
Seca11g00912 249 Pfam AP2 domain 46 90 IPR001471 GO:0003700|GO:0006355
Seca11g00912 249 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 122 - -
Seca11g00912 249 ProSiteProfiles AP2/ERF domain profile. 34 98 IPR001471 GO:0003700|GO:0006355
Seca11g00912 249 SUPERFAMILY DNA-binding domain 46 100 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00912 Seca-Chr11 9415848 9420204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00912 2 243 AP2-EREBP Transcription Factor Family AT1G79700 48.148 3.85e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g00912 AP2 1.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00912 K09285 - gmx:100793339 338.191