Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00908 ATGGTCGCCGTGAAAAGGTTGAAAGATGTTACTGGTAGTGCTGGTGAATCCCAGTTCCAAACAGAATTGGAGATGATCAGCATGGCAGTTCACCGTAATTTACTTCGCTTAATTGGATGTTGTGCCACTCCTAATGAAAAACTTCTGGTTTATCCTTATATGTCTAATGGCAGTGTGGCCTCCAGGCTTAAAGGTGATATGATAGGCAAACCAGCTTTAGATTGGAATACAAGAAAGAGAATAGCAATTGGAGCTGCCAGAGGCCTCCTGTATCTTCATGAGCAATGCGACCCAAAGATAATACACAGAGATGTAAAGGCCGCTAATGTGCTTCTGGATGACTATTGTGAGGCTGTTGTTGGTGATTTTGGGCTTGCAAAGCTCCTAGATCATGCAGATTCGCATGTCACCACTGCTGTCCGTGGAACTGTTGGACACATTGCACCAGAGTACCTCTCCACTGGCCAATCATCTGAGAAAACTGATGTATTTGGATTCGGCATTCTCTTGTTAGAGCTCATAACTGGAATGACAGCTCTTGAGTTTGGGAAAACTGTGAATCAGAAAGGTGCTATGCTGGAGTGGGTTAGGAAAATACAGCAAGAAAAGAATGTTGAAGTATTGGTGGACAAAGAGCTGGGGAACAACTATGATAGAATAGAGATAGGGGAGATGCTGCAAGTAGCTTTACTTTGTACACAATATTTGACAGCCCACCGCCCCAAAATGTCTGAAGTGGTCCGAATGCTTGAAGGTGATGGGCTTGCTGAGAAGTGGGCATCATCACATAATTATGGTAGCCACGCCATGAACCCTAGTCACAGTAACTGTAGCAATAGTTCATCCCACCCTACATCTGCTTCAAAACATGATGACAATGTTCATGATCGTTCAAGCATGTTTGGCATGACAATGGATGATGATGATGAACAGTCTTTGGATTCCTATGCTATGGAACTCTCTGGTCCTAGATAA 975 0.4369 MVAVKRLKDVTGSAGESQFQTELEMISMAVHRNLLRLIGCCATPNEKLLVYPYMSNGSVASRLKGDMIGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKIQQEKNVEVLVDKELGNNYDRIEIGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASSHNYGSHAMNPSHSNCSNSSSHPTSASKHDDNVHDRSSMFGMTMDDDDEQSLDSYAMELSGPR. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00908 324 SUPERFAMILY Protein kinase-like (PK-like) 1 251 IPR011009 -
Seca11g00908 324 Pfam Protein tyrosine and serine/threonine kinase 2 250 IPR001245 GO:0004672|GO:0006468
Seca11g00908 324 ProSiteProfiles Protein kinase domain profile. 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00908 324 MobiDBLite consensus disorder prediction 266 324 - -
Seca11g00908 324 SMART serkin_6 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00908 324 MobiDBLite consensus disorder prediction 288 304 - -
Seca11g00908 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 100 112 IPR008271 GO:0004672|GO:0006468
Seca11g00908 324 MobiDBLite consensus disorder prediction 266 287 - -
Seca11g00908 324 Gene3D Phosphorylase Kinase; domain 1 1 54 - -
Seca11g00908 324 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 260 - -
Seca11g00908 324 FunFam Somatic embryogenesis receptor-like kinase 1 54 270 - -
Seca11g00908 324 Gene3D Transferase(Phosphotransferase) domain 1 55 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00908 Seca-Chr11 9349775 9355118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00908 1 324 Receptor kinase-like Gene Family AT5G16000 71.472 2.08e-155 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca11g00908 PK_Tyr_Ser-Thr 9.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00908 - - gmx:100797186 580.096