Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00874 ATGGGCACCGGTAGTTTTACTCAAGTTAAAGGTGACACCTTTCTACCTCCATCAGAACAGCCACCCTATTTTCTTTCTCAGCCAAACCCACCTTTCCCTCCCATTATTCGATCTGATAATCTCAGTTTGAACGATAAGGCCTTGAAGGTTAGTCCTAGCATACTCCTTATCATCATAATTCTCGCTATTGTTTTCTTCATTTCTGGTTTGCTTCACCTCCTCGTTAGATTTCTATGGAGACCTCAGAGTAGAGAGCCTGATGATTTGGACAATGTCACTGCTCTTCAAGGTCAATTGCAGCAACTCTTCCATCTCCATGATGCTGGTGTTGACCAGTCCTTCATTGATACCCTCCCTGTCTTCTTTTACAAAGCTATCATAGGATTGAAGAACCCTTTTGATTGCGCTGTTTGTTTGTGTGAATTTGAGCCAGAGGACAAGCTAAGGTTGTTGCCTAAATGTAGCCATGCTTTTCACATGGAGTGTATTGACACATGGCTCTTGTCACACTCTACTTGTCCTCTTTGTAGAGCTAGCTTGCTCCCTGATTTCTCTGGAAACAACAACTGTTCCCCTATTGTTCTTGTTCTAGAATCTGGGAGTGATAGTTCAAGGGAGATTGTTCCAGAAAGAGAGGCTTCTGGTGCTGTTGTTGGAAGAACAAGTTCGGTTATCACAACAAATTCTCGTCTTGGTTGCCGTGGAGAAAGCGAATTTGGATCAACCCGTGTTGATTTAGCTTCAAGTGAGAATCCTGATCCAAACATAGCAGGGGATGGTGTGGAGAAAGTGGTTACTGTTAAGCTGGGAAAGTACAGGAACGTGGATGGTGGCTGTGAAGAAGGAAGTAGTACCAACAATGTAGATGCTAGAAGGTGCTTTTCTATGGGGTCATTTGCTTATGTTTTGGATGAAAGTTCCTCACTTCAGGTACCTATAAGAACCCCAATCAAGCAGCAATCAAGTAAGAAAAGGTCTGTTTTGCCTTTGACCCCTGGACACAGGCCTGCTATGTCAGAATGTGACTGTGAATCCAGAAGAGATTTCAAATTTTCAGGTTTTGATACAACTAGAGGTGTTGAGGACCTTACTGGGACATCAAGTACTGGGAATGGTAGTGGGGCTGCTATTGGAAGGAGCAGAAAGGAGAGCTTTTCTATCTCAAAGATTTGGCTAAGGGGGAAGAAGGATAAGTCAAATTCAGTAGCAGATTCATCCAGAAGGGCTGTTTCATTCAGGTTCCCAGCACAGCATAATGTTGTTGGTGATAGTGCTACAGATGATTTGAAGGGCAAGAATGGCAAATTTGATACAAGGAGTACTATTTCTGAGATGGATATTGGGAAATGGGAAAATGGAGGAGGAAGTGAGTTTGGGTATGATGAGGAAAACCAGAGCTGTTATAGTATGGATTCTCAAGCTAGGGCACCTTCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAAGACAGAACAAGGTTGTTCACTCATCCTATGCTTCCAATCTCTAG 1512 0.4319 MGTGSFTQVKGDTFLPPSEQPPYFLSQPNPPFPPIIRSDNLSLNDKALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQSREPDDLDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFFYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDFSGNNNCSPIVLVLESGSDSSREIVPEREASGAVVGRTSSVITTNSRLGCRGESEFGSTRVDLASSENPDPNIAGDGVEKVVTVKLGKYRNVDGGCEEGSSTNNVDARRCFSMGSFAYVLDESSSLQVPIRTPIKQQSSKKRSVLPLTPGHRPAMSECDCESRRDFKFSGFDTTRGVEDLTGTSSTGNGSGAAIGRSRKESFSISKIWLRGKKDKSNSVADSSRRAVSFRFPAQHNVVGDSATDDLKGKNGKFDTRSTISEMDIGKWENGGGSEFGYDEENQSCYSMDSQARAPSFARRTLLWLTGRQNKVVHSSYASNL. 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00874 503 CDD RING-H2_EL5-like 134 177 - -
Seca11g00874 503 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Seca11g00874 503 MobiDBLite consensus disorder prediction 1 22 - -
Seca11g00874 503 FunFam RING-H2 finger protein ATL46 97 182 - -
Seca11g00874 503 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 391 - -
Seca11g00874 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 182 IPR013083 -
Seca11g00874 503 SMART ring_2 135 176 IPR001841 -
Seca11g00874 503 Pfam Ring finger domain 134 177 IPR001841 -
Seca11g00874 503 SUPERFAMILY RING/U-box 114 188 - -
Seca11g00874 503 MobiDBLite consensus disorder prediction 317 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00874 Seca-Chr11 9041191 9042702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00874 40 501 C3H Transcription Factor Family AT2G18650 45.756 6.87e-103 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00874 - - gmx:100797283 776.548