Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00871 ATGCTCTCGAGATCTTGCTTAGGGTTATTGAATCTGGTATCGGTGGATGATTACCAGGCACTGAGTCGAATTCCGAGAGTGATGACGGTTTCTGGAGATGCACCACAGTTGGAGATCGACGACCGTGGGAATTACGGATCCGACGGCGTCGTTTCACCGGTGTCACGAGAACGGAGGATCATTGTGGCGAATCAGTTACCGATACGCGCTTTTCGCGACGGGAAGAAATGGAGATTCGAATGGGACAGGGATAGCCTCGTGCTTCAAGCGAAGGACGGGTTCCCTTCGGAGGTTGAAGTGCTCTACGTTGGTTCATTGAAGGCTGAGATCGAAGCATGTGAACAAGAAGAAGTGGCTCAGGTGCTTCTAGAAAAGTTCCGTTGTGTTCCTACGTTCTTACCTTCTGAGGTTCATAACAAGTTCTACCATGGTTTCTGCAAGCATTACCTCTGGCCTCTGTTTCATTACATGCTTCCCATGTCACCGAGCCAGGGTGCGCGTTTCGACCGTTCACAGTGGCAGGCCTACGTGCTCGCTAACAAGATCTTCGCTGACAAGGTAACCGAGGTTATCAACCCTGACGAGGATTACGTTTGGGTCCATGATTATCACCTCATGATCTTACCCACTTTTCTGAGGAAACGTTTCCACCGCGTGAAGCTCGGGTTCTTCTTGCACAACACGTTCCCGACGTCGGAAATCTACAGGACCATACCGGTTCGAGAGGAGATTCTGAGGGCGTTTTTGAACTGTGATTTGATTGGGTTCCACACATTCGATTACGCGCGGCATTTTTTGTCTTGTTGTAGCAGGATGTTGGGTTTGGATTACGAGTCCAAGAGGGGTTACATTGGGCTAGATTATTATGGGAGAACGGTGACCATTAAGATCCTACCTGCTGGGATTCACATGGGTCTGCTTGAGTCGGTTTTGTCGTTGCCCCAAACCGCTTCGAGGGTGAAGGAGTTGAAGGAACAATTTGAAGGGAAGGTTGTGATCTTGGGTGTGGATGACATGGACTTGTTCAAAGGTATTAGCTTGAAGTTCTTGGCATTGGGACAGCTTTTGGATGAGAACGAAGATTTAAGGGGGAGAGTGGTGTTGGTTCAGATTCTCAACCCTGCGAGGAGTAAAGGGAAAGACATTCAGGATGTGAAGAGCGAGAGCGAGGCTATTGCTAAAGAGATTAATGAGAAACATGGTAAACCCGGGTACCAACCAATTGTTTGCATAAACGGTCCCGTTTCAACTCAGGAGAAGGCTGCATACTATGCTATCTCAGAGTGCTGTGTTGTCAGTGCTGTGAGGGATGGGATGAATTTGATGCCTTATGAGTACACTGTTTGCAGGCAGGGAAGTGCTGCATTGGATAAGGCACTTGGGGTTGAAGGTGTGAGTCCCAAACAGAGCGTTATCATTGTTTCTGAGTTCATTGGGTGCTCCCCTTCCCTCAGTGGAGCCATCAGGGTAAATCCATGGAACATTGATGATGTTTCTGAGGCCATGAACTCTGCTATCACAATGCCAGAGGCAGAGAAGCACTTGCGGCATGAGAAGCATTATAAGTATATAAGTTCTCATGATGTGGCATATTGGGCGAGGAGTTTTGATCAGGATTTAGAGAGAGCTTGTAGGGAGCATTACCTCAAGAGGTGTTGGGGTGTTGGTTTGGGTCTGGGATTCAGAGTTGTTGCTTTGGATCCCACCTTTAGGAAACTATCTGTGGATAAAATTGTCTCTGCTTACAGAAATACAGAGAGTAGGTTGATCCTTTTGGACTATGATGGCACCATGATGCCACAGGCTTCAATAGACAAAACTCCAAGCAGGGAAGTTATCTCTGTCTTGAATTATTTATGCAGTGATCCCAAAAATGTAGTGTTCATTGTGAGTGGCAGAGATAGGGATCGCCTAAGTGGGTGGTTTTCTCCATGTGACAAGCTGGGTATCTCTGCTGAGCATGGTTACTTCTCCAGGCGGAGTAAGGATTCTACTTGGGAGACCTGTGGATTGACAACAGACTTTGATTGGAAAATGATTGTAGAACCTGTGATGGCGCTTTATACAGAAGCAACGGATGGTTCTTTCATTGAAACAAAGGAAAGCGCAATGGTTTGGCACCATCAAGAAGCGGATCCTCACTTTGGATCATGCCAAGCAAAAGAGCTTCTTGATCACCTGGAGAATGTGCTGGCTAATGAGCCAGTGGTGGTTAAAAGGGGACAACATATTGTTGAAGTTAAACCTCAGGGTGTGAGCAAAGGTAATGTGGTTGAGAACCTTATCTCAACCATGCGAAGTGAGGGGAAATCACCAGATTTTCTGCTGTGCATAGGAGATGATCGCTCAGATGAAGATATGTTTGAAAGCATTGCTCATTCAGTTTCTAATCCAGCTCTGCCAACCATATCACAAGTGTTTGCATGCACTGTTGGTCAGAAACCAAGTATGGCTAAATACTATTTGGAAGATACTAGCGAAGTTATCAAGTTACTGGAAGGACTTGCAACTGCATCACCACCATCTACATCCATAGCTTCTCAGGAATTGCGAGGAACACTGTAG 2565 0.4663 MLSRSCLGLLNLVSVDDYQALSRIPRVMTVSGDAPQLEIDDRGNYGSDGVVSPVSRERRIIVANQLPIRAFRDGKKWRFEWDRDSLVLQAKDGFPSEVEVLYVGSLKAEIEACEQEEVAQVLLEKFRCVPTFLPSEVHNKFYHGFCKHYLWPLFHYMLPMSPSQGARFDRSQWQAYVLANKIFADKVTEVINPDEDYVWVHDYHLMILPTFLRKRFHRVKLGFFLHNTFPTSEIYRTIPVREEILRAFLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTIKILPAGIHMGLLESVLSLPQTASRVKELKEQFEGKVVILGVDDMDLFKGISLKFLALGQLLDENEDLRGRVVLVQILNPARSKGKDIQDVKSESEAIAKEINEKHGKPGYQPIVCINGPVSTQEKAAYYAISECCVVSAVRDGMNLMPYEYTVCRQGSAALDKALGVEGVSPKQSVIIVSEFIGCSPSLSGAIRVNPWNIDDVSEAMNSAITMPEAEKHLRHEKHYKYISSHDVAYWARSFDQDLERACREHYLKRCWGVGLGLGFRVVALDPTFRKLSVDKIVSAYRNTESRLILLDYDGTMMPQASIDKTPSREVISVLNYLCSDPKNVVFIVSGRDRDRLSGWFSPCDKLGISAEHGYFSRRSKDSTWETCGLTTDFDWKMIVEPVMALYTEATDGSFIETKESAMVWHHQEADPHFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGNVVENLISTMRSEGKSPDFLLCIGDDRSDEDMFESIAHSVSNPALPTISQVFACTVGQKPSMAKYYLEDTSEVIKLLEGLATASPPSTSIASQELRGTL. 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00871 854 FunFam Alpha,alpha-trehalose-phosphate synthase 310 525 - -
Seca11g00871 854 NCBIfam HAD-IIB family hydrolase 589 795 IPR006379 -
Seca11g00871 854 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 51 308 - -
Seca11g00871 854 Gene3D Glycogen Phosphorylase B; 309 525 - -
Seca11g00871 854 CDD GT20_TPS 58 541 IPR001830 GO:0003824|GO:0005992
Seca11g00871 854 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 717 848 - -
Seca11g00871 854 FunFam Trehalose-6-phosphate synthase 2 671 750 - -
Seca11g00871 854 NCBIfam trehalose-phosphatase 588 836 IPR003337 GO:0003824|GO:0005992
Seca11g00871 854 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 58 545 - -
Seca11g00871 854 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 587 704 - -
Seca11g00871 854 Pfam Trehalose-phosphatase 591 826 IPR003337 GO:0003824|GO:0005992
Seca11g00871 854 Pfam Glycosyltransferase family 20 58 541 IPR001830 GO:0003824|GO:0005992
Seca11g00871 854 Gene3D Glycogen Phosphorylase B; 52 308 - -
Seca11g00871 854 CDD HAD_TPP 589 830 - -
Seca11g00871 854 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 52 837 IPR001830 GO:0003824|GO:0005992
Seca11g00871 854 Gene3D - 717 847 IPR023214 -
Seca11g00871 854 Gene3D - 587 706 IPR023214 -
Seca11g00871 854 SUPERFAMILY HAD-like 588 836 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00871 Seca-Chr11 8962214 8965354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00871 10 839 Trehalose Biosynthesis Gene Families AT2G18700 69.176 0.0 1192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00871 K16055 - gmx:100810498 1520.37