Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00864 ATGGGTAAGTGGTTCTGGTGCCATTTTCTTATCAAGATTTTGGTTGTGCTGCTACATATACAAAGTGGGAGTGGGTTAAATGCAACATCAATGGGAGTGATCAAGTTGAGAGTCGGGGTACCCAAGAAAGACGGTTTCTCCCAATTTGTGAACGTAGCTTGGGACTCTCGGGAAAACAAATACAATATCACTGGATATTGCATGGAGGTCTTCTATGCCGTTATAAACCACTTACCTTTCAACGTTTCTCTACAAATTGAACCTTATGTTAATGAATCAGGACACAGTGCTGGAACATACGATTCACTTCTCCAACACCTCCCAACCAAGCAGTATGATGTTGTGGTGGGGGATATATCAATCGTGGCTAACCGTTCACAATATGTAGATTTCACACTTCCATATTCAGAATCAGGAGTTAGAATGTTAGTACCAGTTCAACATGGGAGGCACCAAACCATGTGGATCTTTGTGAAACCCTTCAGCTGGGATCTTTGGTTGTGCATAGTCATCATCTCTATGTTCATAGGGCTTGTCATACTCATCATGGAAAGAAATGCACATACCCTGCCTAATCACCACAACGAGGCTTCCCCAAATCGAAACCACCTCAGCGCCATAACCATCTTATGGTTTCCAATATCACAAGCCGTTCTCCCCGAAAGGCAAGTAGTCGCCAAGAACTGCTCGAGATTTGTGTTGATGGTTTGGCTTCTGTTGTCGTTCGTACTCATGCAAAGTTACACCGCAAATTTGACGACCATATTGACATTAGATCAGATTCAACCCAAATTTGTGAGCGTGGAACATCTAAGAAAAGGGGGTTATTATGTTGGGTATCAAGCTGGATCTTTCGTTCAGGATCTGTTGGTACATCAATTGAAATTTAACACATCCAAGCTCAAGGGATATAACAACATTTCTGAATATCACCATGCTTTGAGTATTGGAAGCGAAGTCGCAGCTATATTCGATGAAGTGCCCTATCTTAAGGTCTACCTTCAAAAATATGGGCCCAATTACATCATGGCCGGCCCGACCTATCGAAATGATGGGTTCGGTTTCGCGTTCCCTTTAAACTCTAATCTTACAGCCCACTTTTCGAGAGCTATATTGAACGTGACTGAAAGTGATTTGATGAATGAGATTGAGGAGAATTATTTTGGGAAGTACTATGAATTAGAAGAGAAGTCAACGCAAACGTGTCCTCCAAGCCTCACGTTTTATAGCTTTGCGGGGCTGTTCATGATAATGGGGATTGCTACTTTGTTAGCGTTAGTGGTCTCAGAAACGGTTATTTGGCAAACACCCATTTTGATGGCTAAAGCATACAGTCAAAAATATTTGTTCCGTACTTCATTTGTTCATCCAAGGTCTAATGATTCAACGCATGGAGAGGGTGGAATAGAAATGGAAGACGTTTAA 1425 0.4196 MGKWFWCHFLIKILVVLLHIQSGSGLNATSMGVIKLRVGVPKKDGFSQFVNVAWDSRENKYNITGYCMEVFYAVINHLPFNVSLQIEPYVNESGHSAGTYDSLLQHLPTKQYDVVVGDISIVANRSQYVDFTLPYSESGVRMLVPVQHGRHQTMWIFVKPFSWDLWLCIVIISMFIGLVILIMERNAHTLPNHHNEASPNRNHLSAITILWFPISQAVLPERQVVAKNCSRFVLMVWLLLSFVLMQSYTANLTTILTLDQIQPKFVSVEHLRKGGYYVGYQAGSFVQDLLVHQLKFNTSKLKGYNNISEYHHALSIGSEVAAIFDEVPYLKVYLQKYGPNYIMAGPTYRNDGFGFAFPLNSNLTAHFSRAILNVTESDLMNEIEENYFGKYYELEEKSTQTCPPSLTFYSFAGLFMIMGIATLLALVVSETVIWQTPILMAKAYSQKYLFRTSFVHPRSNDSTHGEGGIEMEDV. 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00864 474 SMART GluR_14 35 390 IPR001320 GO:0015276|GO:0016020
Seca11g00864 474 FunFam Glutamate receptor 2.7 31 153 - -
Seca11g00864 474 Gene3D - 154 301 - -
Seca11g00864 474 Pfam Ligand-gated ion channel 391 421 IPR001320 GO:0015276|GO:0016020
Seca11g00864 474 CDD GluR_Plant 35 388 - -
Seca11g00864 474 SUPERFAMILY Periplasmic binding protein-like II 33 390 - -
Seca11g00864 474 Pfam Bacterial extracellular solute-binding proteins, family 3 60 390 IPR001638 -
Seca11g00864 474 Gene3D - 29 153 - -
Seca11g00864 474 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 435 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00864 Seca-Chr11 8842890 8845132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00864 35 428 Ion Channels AT5G11210 37.594 8.12e-89 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00864 K05387 - gmx:100811144 614.764