Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00859 ATGGGAATTGAAAGAGGAGGACTCAAGGGTTTTAGGAGCGGCTGGAGTGTGCCGCCGAAGCCATGTGATTCTTGCAAGTTGGCTTCGGCGGCGCTCTTCTGCCGCCCTGATTCCGCGTTTCTCTGCATCGCCTGTGATTCCAAGATTCACTGCGCCAACAAGCTCGCATCGCGCCACGAGCGCGTGTGGATGTGTGAGGTGTGCGAGCAAGCACCTGCCTCTGTCACCTGCAAGGCCGACGCCGCCGCCCTCTGCGTCACGTGCGACTCAGACATCCACTCTGCTAACCCCCTCGCCCGCCGCCACGAGCGTGTCCCTGTCGAGCCCTTCTTTGAATCCGCTGAGTCCATCGTGAAATCCTCCGCCGCTTCCTTTAACTTCGTCGTCCCTAACGACGACGGATTCAACCAAGACGACGCTGAAGCAGCGGCGTGGCTCATTCCTAACCCGAATTTCGGATCCAAGCTCATGGACGCTCCTGATATCAAGTCCAGGGAGATGTTCTTCTCAGAAATGGATCCGTTTCTGGATTTCGATTACTCAAACTCCTTCCAAAACAACAACCACAACAGCGCAGTAAACGACAGCGTCGTTCCAGTTCAAACCAAACCCGCTCCTGCTCCCGCTCCCGCTCCTCTGATGAATCATCACTCAGAAGGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTATCCTCCTTTAACTACAATTCTCAGTCTCTTAGCCAAAGCGTTTCTTCGTCTTCGCTTGATGTTGGAGTGGTGCCAGAGGGGAACACCGTGTCGGAGATATCGTATCCTTTCGGTATGAATAGTTCCGATTCGAGTGGGATGGTGTCAGGAGGTAGCAGCCAAGGGCAAGGGGTTACGCAGTTGTGTGGGATGGATCGTGAAGCGAGGGTTCTGAGATACAGAGAGAAGAGGAAGAACCGCAAGTTTGAGAAGACGATTCGTTACGCTTCGCGAAAGGCTTACGCGGAAACCCGGCCCAGAATCAAAGGCCGGTTCGCCAAACGAACCGAAATTGACTCGGATGTGGACCGTCTGTATAGCCCTGGTGCTGGTCTCACAGTCCCTGGGTCTCTTATCATGGACACTCCCTACGGCGTCGTGCCAACGTTTTAG 1125 0.544 MGIERGGLKGFRSGWSVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFESAESIVKSSAASFNFVVPNDDGFNQDDAEAAAWLIPNPNFGSKLMDAPDIKSREMFFSEMDPFLDFDYSNSFQNNNHNSAVNDSVVPVQTKPAPAPAPAPLMNHHSEGCFDIDFCRSKLSSFNYNSQSLSQSVSSSSLDVGVVPEGNTVSEISYPFGMNSSDSSGMVSGGSSQGQGVTQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYSPGAGLTVPGSLIMDTPYGVVPTF. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00859 374 CDD Bbox1_BBX-like 65 107 - -
Seca11g00859 374 ProSiteProfiles CCT domain profile. 297 339 IPR010402 GO:0005515
Seca11g00859 374 CDD Bbox1_BBX-like 21 64 - -
Seca11g00859 374 SMART bboxneu5 65 107 IPR000315 GO:0008270
Seca11g00859 374 SMART bboxneu5 17 64 IPR000315 GO:0008270
Seca11g00859 374 Pfam CCT motif 297 339 IPR010402 GO:0005515
Seca11g00859 374 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Seca11g00859 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 356 IPR045281 GO:0009909
Seca11g00859 374 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Seca11g00859 374 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00859 Seca-Chr11 8764037 8766219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00859 1 374 C2C2-CO-like Transcription Factor Family AT5G57660 52.835 2.98e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca11g00859 zf-B_box 4.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00859 - - gmx:100805693 577.785