Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00852 ATGGGGTCTGAAAAAAACGTGGGAAAGTATCGGCTTGGAAGGACAATTGGAGAAGGCACATTCTCTAAGGTTAAGCTGGCTGTGAATGGCAATAATGGTGAGAAGGTTGCAATCAAAGTCATTGATAAGCATATGGTCATGGAAAGCAATCTTAAGAATCAGGTCCAAAGAGAGATTAGAACAATGAAGCTTCTGCATCATCCCAATATTGTCAGAATTCACGAGGTTATTGGCACAAAAACTAAGATATACATTGTGATGGAATATGTATCAGGAGGCCATCTATTGGACAAGCTGTCCTATTCCAAGAAGTTGAATGAATGTGAGGCCAGAAAAATCTTCCAGCAACTTATTGATGCTGTGGACTACTGCCACAACAGAGGAGTTTATCATCGAGATCTCAAGCCAGAAAACTTGCTACTTGACAGCAAGGGAAATCTCAAAGTGTCTGATTTTGGATTAAGTGCACTTAAAAAGCCTAATGATGTCTTAAACACACGGTGTGGATCCCCATGCTATGTGGCACCTGAGCTGCTAATGAGCAAAGGGTATGAAGGAGCAGCTGCTGATGTATGGTCATGTGGGGTGATCCTTTATGAGTTACTTGCGGGTTTTCTACCTTTTGATGACCAGAACTTGATGAGCTTGTATCATAAGATATGCAGAGCAGAATACATATGTCCACCATGGTTTACTCAAAGTCAAAAGAAACTAATTACCAAAATACTTGAACCACGTCCTGCAAAGCGGATAACTATGCCAGATATCATTGAAGATGAGTGGTTTCAAGCAGATTATAGTCCTACTTGTGGTTCTGAATTGGATCAGATTATTAACTTGGATGATGATAGTGTGGCTTTCGATTCAATTGAGGAGAAAACCAAAGAGTCAACGATTCCCAAGTCCTCAAGTTTCATTAATGCGTTTAAATTAATAGCCATGTCTCAGGACCTTGATTTATCTGGCCTTTTTGAAGAACAGGATCACAAAAAGCAGAGAACAAGGCTTGGATCGACACACAATATACTTGAAACCATAGAAAAAATAGAAGCTGCTGCAACAGATGTGAGACTGTCAGTAGAGAAAATGAACAACTTTAAGATAAAAATGCAGCCAAAACAGATAATGAAAAGGTCTTCTAGATCATACTTTGATCTATCAGCCCAGGTGATAGAAGTTTCTCCAACTCATTGTGTTGTAGAAATATCAAAATCTACAGGAGATCTAAGAATGTACAACCAATTTTGTGAAAGTCTATCAAGTCTGCTGAAACAAAAATCTCGTATGTCACCACAAAGTCAAGATTCTGTGGATCAGTGCGACGTTGGCATAAAAATGCAAGAAGCTGAATGCTATGAAGAGCCAAATAATGAAGATAGTGAGAAGGTCTTTGTTGGCTATAAATCTGCTTGA 1413 0.3907 MGSEKNVGKYRLGRTIGEGTFSKVKLAVNGNNGEKVAIKVIDKHMVMESNLKNQVQREIRTMKLLHHPNIVRIHEVIGTKTKIYIVMEYVSGGHLLDKLSYSKKLNECEARKIFQQLIDAVDYCHNRGVYHRDLKPENLLLDSKGNLKVSDFGLSALKKPNDVLNTRCGSPCYVAPELLMSKGYEGAAADVWSCGVILYELLAGFLPFDDQNLMSLYHKICRAEYICPPWFTQSQKKLITKILEPRPAKRITMPDIIEDEWFQADYSPTCGSELDQIINLDDDSVAFDSIEEKTKESTIPKSSSFINAFKLIAMSQDLDLSGLFEEQDHKKQRTRLGSTHNILETIEKIEAAATDVRLSVEKMNNFKIKMQPKQIMKRSSRSYFDLSAQVIEVSPTHCVVEISKSTGDLRMYNQFCESLSSLLKQKSRMSPQSQDSVDQCDVGIKMQEAECYEEPNNEDSEKVFVGYKSA. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00852 470 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
Seca11g00852 470 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Seca11g00852 470 FunFam Non-specific serine/threonine protein kinase 1 89 - -
Seca11g00852 470 FunFam Non-specific serine/threonine protein kinase 3 302 - -
Seca11g00852 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Seca11g00852 470 SMART serkin_6 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00852 470 Pfam NAF domain 304 362 IPR004041 GO:0007165
Seca11g00852 470 CDD CIPK_C 307 425 - -
Seca11g00852 470 Gene3D Transferase(Phosphotransferase) domain 1 92 285 - -
Seca11g00852 470 SUPERFAMILY Protein kinase-like (PK-like) 7 263 IPR011009 -
Seca11g00852 470 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Seca11g00852 470 Gene3D Kinase associated domain 1, KA1 301 426 - -
Seca11g00852 470 ProSiteProfiles Protein kinase domain profile. 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00852 470 Pfam Protein kinase domain 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00852 470 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 418 - -
Seca11g00852 470 FunFam Non-specific serine/threonine protein kinase 301 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00852 Seca-Chr11 8648019 8652125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00852 87 423 CBL-interacting serine-threonine protein kinases AT5G57630 63.314 3.49e-146 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca11g00852 Pkinase 7.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00852 - - gmx:100786097 761.911