Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00846 ATGGGTAGAGCTCCATGCTGTGACAAGGCCAATGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTGCACTCAAAGCCTATATTGAAAAGAATGGAACTGGAGGCAATTGGATTGCTCTTCCTCAAAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGGCCTAATATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGCAGCCTTTACATTAGCATTGGCAGCAGGTGGTCCATTATTGCTGCTCAGCTACCTGGAAGGACTGATAATGACATCAAGAACTATTGGAACACCAGATTGAAGAAGAAACTGCTTGGCAGGCGCAAACAATCTTCCAATAATAACCTCAACCCAAAAGACAATATAAATGGAATGATAGAAGAGAACTCTTATTCAAATGCCCTAAGCAGCTCTGCTCTTGAAAGACTCCAACTTCATATGCAACTTCAAACCCTTCAAAACCCTTTCTCTTTCTACAACAACCCTGCCCTGTGGCCCAAGTTGCATCCTTTTCAAGAAAAGATGATCCACCAGAGCATGCAATCTTTGAATGATACATCCCCTAATAACCCTGTGATGCAAAATGCTAATTTGCCTTCCCCTCATCATGTTGGACAAGGACAAAAACATGATGATCATGATCATCAGTTCTATAAACCTCCTACTACTGCTGATCATCATGATGGTGCAAAGATCAATAACACAGAGCTGCAGGTTGGTCTTTTGGAGAATCCTTTGAGTAACAGTTTCATTGCTTCAGGGAATAACAACCCAATAATGCACTCAACAAGTACTGTTATTGCACCAACAAGAGGAGAGGTTGTTGAGCAGAGTAATAATGTGGGACTTCAACAACTTGGTGCACTGCAAACTGAGTTAGATGACATTCTCAACAACAGAACTACTACTACAATGGGTCAGGAAGATCATATGGTTGATCAGTTTGATTGTTTCAGAGAGATGAATGGCTCAAAAGACAGCTTCATTTGGTGGTCCAATGATTCTGCAGATACCAAATCAGCATCCTCAAACTCATGGGAGGATTCATCCACTAATCCAGTTCTTCTGCCAGAAGGGATGTTCCGAGATTATGAACTAGGTTACAGTCTCTAG 1152 0.4141 MGRAPCCDKANVKKGPWSPEEDAALKAYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSSNNNLNPKDNINGMIEENSYSNALSSSALERLQLHMQLQTLQNPFSFYNNPALWPKLHPFQEKMIHQSMQSLNDTSPNNPVMQNANLPSPHHVGQGQKHDDHDHQFYKPPTTADHHDGAKINNTELQVGLLENPLSNSFIASGNNNPIMHSTSTVIAPTRGEVVEQSNNVGLQQLGALQTELDDILNNRTTTTMGQEDHMVDQFDCFREMNGSKDSFIWWSNDSADTKSASSNSWEDSSTNPVLLPEGMFRDYELGYSL. 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00846 383 PANTHER OS09G0431300 PROTEIN 1 256 - -
Seca11g00846 383 FunFam Transcription factor MYB36 70 138 - -
Seca11g00846 383 CDD SANT 71 113 IPR001005 -
Seca11g00846 383 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca11g00846 383 MobiDBLite consensus disorder prediction 195 215 - -
Seca11g00846 383 MobiDBLite consensus disorder prediction 218 242 - -
Seca11g00846 383 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca11g00846 383 SMART sant 13 64 IPR001005 -
Seca11g00846 383 SMART sant 67 115 IPR001005 -
Seca11g00846 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Seca11g00846 383 MobiDBLite consensus disorder prediction 195 242 - -
Seca11g00846 383 FunFam Transcription factor RAX3 7 68 - -
Seca11g00846 383 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Seca11g00846 383 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca11g00846 383 CDD SANT 16 62 IPR001005 -
Seca11g00846 383 Gene3D - 70 138 - -
Seca11g00846 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca11g00846 383 Gene3D - 7 68 - -
Seca11g00846 383 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00846 Seca-Chr11 8601392 8603283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00846 1 184 MYB Transcription Factor Family AT5G57620 78.646 2.28e-102 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g00846 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00846 K09422 - gmx:778083 541.962